Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p24690 Brassica napus
Aa31LG6G5550 Aethionema arabicum
Actinidia07705 Actinidia chinensis
Actinidia39582 Actinidia chinensis
Ah.09g232540 Amaranthus hybridus
Aqoxy1G01688 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea
AT1G30130 Arabidopsis thaliana
ATR1098G050 Amborella trichopoda
Atru.chr10.1193 Acer truncatum
AUR62002725 Chenopodium quinoa
AUR62002729 Chenopodium quinoa
AUR62030180 Chenopodium quinoa
BcaB03g12196 Brassica carinata
BcaB03g12197 Brassica carinata
BcaC01g00157 Brassica carinata
BolC3t19896H Brassica oleracea
BraA08t34424Z Brassica rapa
C03p76410 Brassica napus
CAN.G1744.1 Capsicum annuum
CANSAT35G1510 Cannabis sativa
CARHR029280 Cardamine hirsuta
Carub.0001s2836 Capsella rubella
Ca_00535_v3 Cicer arietinum L.
CBR_g39195 Chara braunii
Cc07_g20130 Coffea canephora
CDE01G0002 Ceratophyllum demersum
CDE12G0425 Ceratophyllum demersum
Cfa000932 Carpinus fangiana
Cfa025678 Carpinus fangiana
Ciclev10015992m.g Citrus clementina
CiPaw.09G122400 Carya illinoinensis
ClCG01G024690 Citrullus lanatus
COL.COLO4_31053 Corchorus olitorius
Cre06.g269300 Chlamydomonas reinhardtii
CsaV3_6G051800 Cucumis sativus L.
CSS0012720 Camellia sinensis var. sinensis
CSS0036233 Camellia sinensis var. sinensis
CSS0046586 Camellia sinensis var. sinensis
DCAR_007885 Daucus carota
DCAR_027905 Daucus carota
DCAR_027906 Daucus carota
DCAR_027907 Daucus carota
Dinv30768 Davidia involucrata
Duzib160G0546 Durio zibethinus
Duzib192G0691 Durio zibethinus
ECA234G1983 Erigeron canadensis
EL10Ac8g19662 Beta vulgaris
Eucgr.E01441 Eucalyptus grandis
FAN11G2536 Fragaria x ananassa
FAN16G0196 Fragaria x ananassa
FAN21G3134 Fragaria x ananassa
FAN25G2659 Fragaria x ananassa
FvH4_3g05380 Fragaria vesca
Glyma.08G293333 Glycine max
Glyma.13G219000 Glycine max
Glyma.15G093200 Glycine max
Gohir.A05G147800 Gossypium hirsutum
Gohir.D05G150300 Gossypium hirsutum
Gorai.009G154400 Gossypium raimondii
GSVIVG01021513001 Vitis vinifera
HanXRQChr16g0525711 Helianthus annuus
Haze_05617 Corylus avellana
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla
HPP92_012186 Vanilla planifolia
Hund15862 Selenicereus undatus
Lalb_Chr18g0055371 Lupinus albus
Lj2A319G39 Lonicera japonica
Lj6g0016438 Lotus japonicus
Lsat_1_v5_gn_4_29400 Lactuca sativa
Manes.17G071500 Manihot esculenta
Mapoly0156s0023 Marchantia polymorpha
MBI18_g24473_MAGBIO Magnolia biondii
MCO01G569 Micromonas commoda
MCO14G385 Micromonas commoda
MD05G1282500 Malus domestica
Medtr2g019220 Medicago truncatula
MELO3C007126.2 Cucumis melo
Migut.D01761 Erythranthe guttata
MSTRG.16252 Avicennia marina
Nitab4.5_0000484g0050 Nicotiana tabacum
Nitab4.5_0000717g0030 Nicotiana tabacum
Nn4g26588 Nelumbo nucifera
Oeu042460.1 Olea europaea
Os07g0153300 Oryza sativa ssp. japonica
Peaxi162Scf00394g00119 Petunia axillaris
PGR031G0971 Punica granatum
PGSC0003DMG400002455 Solanum tuberosum
PGSC0003DMG401013075 Solanum tuberosum
Phvul.006G165700 Phaseolus vulgaris
Phvul.007G245866 Phaseolus vulgaris
Potri.011G084000 Populus trichocarpa
Pp3c19_5890 Physcomitrium patens
PRCOL_00005919 Prasinoderma coloniale
Prupe.4G082300 Prunus persica
Psat1g188200 Pisum sativum
PSO339G2615 Papaver somniferum
PSO384G4094 Papaver somniferum
QL05p057428 Quercus lobata
RcHm_v2.0_Chr5g0014371 Rosa chinensis
Rhsim02G0159200 Rhododendron simsii
Rhsim02G0159300 Rhododendron simsii
Sabra11G0066600 Salix brachista
SalBow2G0785 Salvia bowleyana
SalBow2G2566 Salvia bowleyana
SalBow2G3627 Salvia bowleyana
SalBow8G0891 Salvia bowleyana
Sc24g0001740 Simmondsia chinensis
Sed0002032 Sechium edule
SEGI_34988 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32549 Striga asiatica
SGA_v2.0_scaffold119G32786 Striga asiatica
SGA_v2.0_scaffold333G48980 Striga asiatica
SGA_v2.0_scaffold37G14914 Striga asiatica
SGA_v2.0_scaffold44G16814 Striga asiatica
SMO364G0117 Selaginella moellendorffii
Solyc05g053950.4 Solanum lycopersicum
Sopen05g032420 Solanum pennellii
Sp1g25990 Schrenkiella parvula
TAR626G1592 Trochodendron aralioides
THA.LOC104812673 Tarenaya hassleriana
Thecc.06G148800 Theobroma cacao
Thhalv10008271m.g Eutrema salsugineum
TPR.G26236 Trifolium pratense
TPR.G26242 Trifolium pratense
TPR.G26247 Trifolium pratense
TPR.G7274 Trifolium pratense
TWI53G0207 Tripterygium wilfordii
unitig_26.g9756 Utricularia gibba
unitig_26.g9757 Utricularia gibba
vmacro10957 Vaccinium macrocarpon
VMungo0540G0312 Vigna mungo
Zm00001eb300160 Zea mays

User provided reference genes

Program Settings