Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p44480 Brassica napus
A10p23990 Brassica napus
Aa31LG11G14780 Aethionema arabicum
Aa31LG5G10660 Aethionema arabicum
Actinidia16935 Actinidia chinensis
Actinidia35750 Actinidia chinensis
Ah.04g164090 Amaranthus hybridus
Ah.06g185650 Amaranthus hybridus
AL3G10630 Arabidopsis lyrata
AL6G25450 Arabidopsis lyrata
Aqoxy3G01047 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.GIFS38 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RS8E34 Arachis hypogaea
AT3G01520 Arabidopsis thaliana
AT5G14680 Arabidopsis thaliana
ATR0730G149 Amborella trichopoda
Atru.chr6.2224 Acer truncatum
Atru.chr9.39 Acer truncatum
AUR62019615 Chenopodium quinoa
AUR62037593 Chenopodium quinoa
BcaC05g30411 Brassica carinata
BcaC05g30413 Brassica carinata
BcaC05g30450 Brassica carinata
BolC5t35157H Brassica oleracea
BolC9t59084H Brassica oleracea
BraA05t23208Z Brassica rapa
BraA10t44463Z Brassica rapa
C09p62460 Brassica napus
C09p75070 Brassica napus
CAN.G76.9 Capsicum annuum
CANSAT64G1846 Cannabis sativa
CARHR075410 Cardamine hirsuta
CARHR198630 Cardamine hirsuta
Carub.0003s0055 Capsella rubella
Carub.0006s1285 Capsella rubella
Ca_04185_v3 Cicer arietinum L.
CBR_g19061 Chara braunii
Cc07_g02070 Coffea canephora
CDE05G1594 Ceratophyllum demersum
Cfa007414 Carpinus fangiana
Ciclev10016926m.g Citrus clementina
CiPaw.03G039500 Carya illinoinensis
CiPaw.04G025900 Carya illinoinensis
ClCG09G019040 Citrullus lanatus
COL.COLO4_28999 Corchorus olitorius
Cpa.g.sc272.2 Carica papaya
Cpa.g.sc3954.1 Carica papaya
CsaV3_5G027320 Cucumis sativus L.
CSS0004448 Camellia sinensis var. sinensis
CSS0005158 Camellia sinensis var. sinensis
CSS0034411 Camellia sinensis var. sinensis
DCAR_015052 Daucus carota
Dinv33479 Davidia involucrata
Duzib147G1022 Durio zibethinus
ECA232G2104 Erigeron canadensis
EL10Ac4g08394 Beta vulgaris
Eucgr.A00139 Eucalyptus grandis
Eucgr.E03331 Eucalyptus grandis
Eucgr.I02534 Eucalyptus grandis
Eucgr.J02214 Eucalyptus grandis
Eucgr.K00690 Eucalyptus grandis
Eucgr.K02076 Eucalyptus grandis
Eucgr.K02131 Eucalyptus grandis
Eucgr.L02063 Eucalyptus grandis
Eucgr.L03339 Eucalyptus grandis
FAN02G4573 Fragaria x ananassa
FvH4_6g50880 Fragaria vesca
Glyma.05G006300 Glycine max
Glyma.19G006700 Glycine max
Gohir.A05G358600 Gossypium hirsutum
Gohir.A07G221300 Gossypium hirsutum
Gohir.D04G055500 Gossypium hirsutum
Gohir.D07G228000 Gossypium hirsutum
Gorai.001G263000 Gossypium raimondii
Gorai.012G062300 Gossypium raimondii
GSVIVG01032456001 Vitis vinifera
HanXRQChr09g0266091 Helianthus annuus
Haze_14688 Corylus avellana
Hma1.2p1_0858F.1_g229300 Hydrangea macrophylla
Hma1.2p1_0993F.1_g245390 Hydrangea macrophylla
HPP92_026388 Vanilla planifolia
Hund28362 Selenicereus undatus
Hund28366 Selenicereus undatus
Lalb_Chr21g0319511 Lupinus albus
Lj2g0023587 Lotus japonicus
Lju41C36T14 Lonicera japonica
Lsat_1_v5_gn_4_182780 Lactuca sativa
Manes.15G165900 Manihot esculenta
Mapoly0002s0027 Marchantia polymorpha
MBI10_g06752_MAGBIO Magnolia biondii
MBI10_g30090_MAGBIO Magnolia biondii
MD09G1031200 Malus domestica
MD17G1033100 Malus domestica
Medtr1g116290 Medicago truncatula
Medtr6g006190 Medicago truncatula
MELO3C021552.2 Cucumis melo
Migut.K01375 Erythranthe guttata
MSTRG.24024 Avicennia marina
MSTRG.3164 Avicennia marina
Nitab4.5_0003505g0010 Nicotiana tabacum
Nitab4.5_0004321g0030 Nicotiana tabacum
Nn3g16852 Nelumbo nucifera
Nn4g22761 Nelumbo nucifera
Oeu004721.1 Olea europaea
Os02g0707900 Oryza sativa ssp. japonica
Peaxi162Scf00700g00531 Petunia axillaris
PGR083G1545 Punica granatum
PGSC0003DMG400031388 Solanum tuberosum
Phvul.004G012200 Phaseolus vulgaris
Potri.017G071700 Populus trichocarpa
Pp3c11_4100 Physcomitrium patens
Pp3c2_32540 Physcomitrium patens
Prupe.3G286400 Prunus persica
Psat1g056560 Pisum sativum
PSO541G3927 Papaver somniferum
PSO781G0101 Papaver somniferum
QL02p075974 Quercus lobata
RcHm_v2.0_Chr2g0172261 Rosa chinensis
Rhsim08G0053600 Rhododendron simsii
Sabra17G0060900 Salix brachista
Sc03g0011080 Simmondsia chinensis
Sed0011143 Sechium edule
Sed0015898 Sechium edule
SEGI_07525 Sequoiadendron giganteum
SEGI_19649 Sequoiadendron giganteum
SGA_v2.0_scaffold30G12451 Striga asiatica
SHI22285 Sapria himalayana
SMO144G0068 Selaginella moellendorffii
Solyc12g062860.2 Solanum lycopersicum
Sopen12g026620 Solanum pennellii
Sp3g00530 Schrenkiella parvula
Sp6g29360 Schrenkiella parvula
TAR629G0682 Trochodendron aralioides
THA.LOC104821081 Tarenaya hassleriana
Thecc.04G011400 Theobroma cacao
Thhalv10014824m.g Eutrema salsugineum
Thhalv10021628m.g Eutrema salsugineum
TPR.G24793 Trifolium pratense
TPR.G35369 Trifolium pratense
TWI12G1060 Tripterygium wilfordii
TWI36G0007 Tripterygium wilfordii
vmacro05838 Vaccinium macrocarpon
vmacro18257 Vaccinium macrocarpon
VMungo0464G0124 Vigna mungo
Zm00001eb188520 Zea mays

User provided reference genes

Program Settings