Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12890 Brassica napus
A06p29100 Brassica napus
Aa31LG11G1230 Aethionema arabicum
Actinidia13575 Actinidia chinensis
Ah.07g207900 Amaranthus hybridus
AL8G39220 Arabidopsis lyrata
Aqoxy7G00728 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea
AT5G62390 Arabidopsis thaliana
ATR1153G063 Amborella trichopoda
Atru.chr1.1456 Acer truncatum
Atru.chr1.716 Acer truncatum
Atru.chr5.265 Acer truncatum
AUR62002195 Chenopodium quinoa
AUR62015515 Chenopodium quinoa
BcaC01g02462 Brassica carinata
BcaC01g02463 Brassica carinata
BcaNung02779 Brassica carinata
BolC1t01505H Brassica oleracea
BolC3t18705H Brassica oleracea
BraA01t01233Z Brassica rapa
BraA06t25857Z Brassica rapa
C01p15530 Brassica napus
C03p64500 Brassica napus
CAN.G1067.7 Capsicum annuum
CAN.G319.13 Capsicum annuum
CAN.G48.15 Capsicum annuum
CANSAT56G0052 Cannabis sativa
CARHR276170 Cardamine hirsuta
Carub.0008s2307 Capsella rubella
Ca_25004_v3 Cicer arietinum L.
Ca_25005_v3 Cicer arietinum L.
Cc02_g04200 Coffea canephora
CDE02G0091 Ceratophyllum demersum
CDE11G1075 Ceratophyllum demersum
Ciclev10005111m.g Citrus clementina
CiPaw.03G094100 Carya illinoinensis
CiPaw.04G060200 Carya illinoinensis
ClCG09G015150 Citrullus lanatus
COL.COLO4_07114 Corchorus olitorius
COL.COLO4_12507 Corchorus olitorius
COL.COLO4_14129 Corchorus olitorius
Cpa.g.sc3.315 Carica papaya
CsaV3_7G006320 Cucumis sativus L.
CSS0003747 Camellia sinensis var. sinensis
CSS0020740 Camellia sinensis var. sinensis
DCAR_020192 Daucus carota
Dinv22950 Davidia involucrata
Dinv28566 Davidia involucrata
Duzib205G1009 Durio zibethinus
ECA238G0955 Erigeron canadensis
ECA238G1972 Erigeron canadensis
EL10Ac3g05838 Beta vulgaris
Eucgr.A02891 Eucalyptus grandis
FAN01G3063 Fragaria x ananassa
FAN03G1399 Fragaria x ananassa
FAN03G1572 Fragaria x ananassa
FAN06G2498 Fragaria x ananassa
FAN06G5126 Fragaria x ananassa
FAN10G1701 Fragaria x ananassa
FvH4_7g27600 Fragaria vesca
Glyma.09G231200 Glycine max
Glyma.12G005300 Glycine max
Gohir.A03G058600 Gossypium hirsutum
Gohir.D03G107500 Gossypium hirsutum
Gorai.003G113800 Gossypium raimondii
GSVIVG01000691001 Vitis vinifera
GSVIVG01000692001 Vitis vinifera
GSVIVG01018630001 Vitis vinifera
HanXRQChr05g0146091 Helianthus annuus
HanXRQChr14g0461411 Helianthus annuus
Haze_13870 Corylus avellana
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla
HPP92_022436 Vanilla planifolia
Hund04601 Selenicereus undatus
Hund11823 Selenicereus undatus
Lalb_Chr01g0000291 Lupinus albus
Lalb_Chr19g0140361 Lupinus albus
Lj3g0017931 Lotus japonicus
Lj8A42G21 Lonicera japonica
Lsat_1_v5_gn_2_129120 Lactuca sativa
Lsat_1_v5_gn_6_68201 Lactuca sativa
Manes.06G135200 Manihot esculenta
Manes.14G035500 Manihot esculenta
MBI04_g37589_MAGBIO Magnolia biondii
Medtr4g036110 Medicago truncatula
MELO3C018660.2 Cucumis melo
Migut.F00469 Erythranthe guttata
Migut.F01178 Erythranthe guttata
MSTRG.128 Avicennia marina
Nitab4.5_0001383g0010 Nicotiana tabacum
Nitab4.5_0003875g0030 Nicotiana tabacum
Nn1g01074 Nelumbo nucifera
Nn3g18746 Nelumbo nucifera
Nn6g34030 Nelumbo nucifera
Oeu022491.2 Olea europaea
Oeu042561.2 Olea europaea
Os02g0105500 Oryza sativa ssp. japonica
Os06g0104400 Oryza sativa ssp. japonica
Peaxi162Scf00241g00318 Petunia axillaris
PGR042G0730 Punica granatum
PGR142G0385 Punica granatum
PGSC0003DMG400013858 Solanum tuberosum
Phvul.011G006100 Phaseolus vulgaris
Potri.012G126000 Populus trichocarpa
Potri.015G126800 Populus trichocarpa
Prupe.2G277700 Prunus persica
Psat7g207000 Pisum sativum
PSO017G1100 Papaver somniferum
PSO170G0780 Papaver somniferum
QL09p019611 Quercus lobata
RcHm_v2.0_Chr1g0335331 Rosa chinensis
RcHm_v2.0_Chr1g0374461 Rosa chinensis
RhsimUnG0046700 Rhododendron simsii
Sabra12G0094900 Salix brachista
Sabra14G0043300 Salix brachista
Sabra15G0140200 Salix brachista
SalBow2G2587 Salvia bowleyana
Sc13g0007880 Simmondsia chinensis
Sed0005126 Sechium edule
Sed0012571 Sechium edule
SEGI_24397 Sequoiadendron giganteum
SGA_v2.0_scaffold2G01194 Striga asiatica
SGA_v2.0_scaffold543G52822 Striga asiatica
SHI13968 Sapria himalayana
Solyc03g083970.3 Solanum lycopersicum
Sopen03g023730 Solanum pennellii
Sp2g25560 Schrenkiella parvula
TAR374G0329 Trochodendron aralioides
TAR375G0993 Trochodendron aralioides
THA.LOC104821410 Tarenaya hassleriana
Thecc.01G380900 Theobroma cacao
Thecc.03G156500 Theobroma cacao
Thhalv10004201m.g Eutrema salsugineum
TPR.G3671 Trifolium pratense
TWI23G1038 Tripterygium wilfordii
TWI39G1272 Tripterygium wilfordii
unitig_1.g29355 Utricularia gibba
unitig_747.g22057 Utricularia gibba
vmacro06793 Vaccinium macrocarpon
VMungo1127G0816 Vigna mungo
Zm00001eb229450 Zea mays
Zm00001eb379410 Zea mays

User provided reference genes

Program Settings