Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p43980 Brassica napus
A09p28600 Brassica napus
Aa31LG5G13690 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2318 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.805 Anthoceros agrestis
Actinidia35707 Actinidia chinensis
AL3G12820 Arabidopsis lyrata
AL3G25840 Arabidopsis lyrata
AL8G37650 Arabidopsis lyrata
Aqoxy3G04119 Aquilegia oxysepala
AT3G03210 Arabidopsis thaliana
ATR0807G162 Amborella trichopoda
Atru.chr1.2154 Acer truncatum
AUR62004769 Chenopodium quinoa
AUR62037482 Chenopodium quinoa
BcaC05g30317 Brassica carinata
BcaC05g30528 Brassica carinata
BolC5t35029H Brassica oleracea
BraSC90t46712Z Brassica rapa
C05p63600 Brassica napus
CAN.G1681.7 Capsicum annuum
CAN.G404.4 Capsicum annuum
CANSAT21G1480 Cannabis sativa
CARHR077230 Cardamine hirsuta
Carub.0003s0236 Capsella rubella
Ca_05761_v3 Cicer arietinum L.
CBR_g39794 Chara braunii
Cc07_g12800 Coffea canephora
CDE01G0221 Ceratophyllum demersum
CDE02G3442 Ceratophyllum demersum
Cfa007754 Carpinus fangiana
Ciclev10012019m.g Citrus clementina
CiPaw.03G076300 Carya illinoinensis
ClCG05G011360 Citrullus lanatus
COL.COLO4_19768 Corchorus olitorius
Cpa.g.sc178.24 Carica papaya
CsaV3_3G021100 Cucumis sativus L.
CSS0034699 Camellia sinensis var. sinensis
DCAR_003746 Daucus carota
Dinv19078 Davidia involucrata
Dinv28241 Davidia involucrata
Duzib138G1903 Durio zibethinus
ECA238G3642 Erigeron canadensis
Eucgr.H04888 Eucalyptus grandis
FAN19G2113 Fragaria x ananassa
FAN23G3138 Fragaria x ananassa
FAN26G1075 Fragaria x ananassa
FAN28G1653 Fragaria x ananassa
FAN28G2393 Fragaria x ananassa
FvH4_1g27360 Fragaria vesca
Glyma.02G240800 Glycine max
Glyma.14G210400 Glycine max
Gohir.A01G100900 Gossypium hirsutum
Gohir.A07G074000 Gossypium hirsutum
Gohir.A11G169700 Gossypium hirsutum
Gohir.D01G085400 Gossypium hirsutum
Gohir.D04G098033 Gossypium hirsutum
Gohir.D07G078700 Gossypium hirsutum
Gohir.D08G156000 Gossypium hirsutum
Gohir.D11G175900 Gossypium hirsutum
Gorai.001G083200 Gossypium raimondii
Gorai.002G056700 Gossypium raimondii
Gorai.002G111000 Gossypium raimondii
Gorai.004G162300 Gossypium raimondii
Gorai.005G117100 Gossypium raimondii
Gorai.007G188500 Gossypium raimondii
GSVIVG01000363001 Vitis vinifera
GSVIVG01000364001 Vitis vinifera
GSVIVG01034874001 Vitis vinifera
GSVIVG01035235001 Vitis vinifera
GSVIVG01038053001 Vitis vinifera
HanXRQChr14g0443471 Helianthus annuus
Haze_14318 Corylus avellana
Hma1.2p1_0158F.1_g069660 Hydrangea macrophylla
HPP92_020636 Vanilla planifolia
Lalb_Chr10g0104061 Lupinus albus
Lalb_Chr17g0345881 Lupinus albus
Lj4P252T15 Lonicera japonica
LjContig00141g0000865 Lotus japonicus
Lsat_1_v5_gn_2_6720 Lactuca sativa
Lsat_1_v5_gn_2_71721 Lactuca sativa
Lsat_1_v5_gn_5_127001 Lactuca sativa
Manes.10G079000 Manihot esculenta
Mapoly0003s0310 Marchantia polymorpha
MBI06_g13889_MAGBIO Magnolia biondii
MCO15G483 Micromonas commoda
MD09G1279600 Malus domestica
Medtr5g076930 Medicago truncatula
Medtr5g076940 Medicago truncatula
MELO3C020241.2 Cucumis melo
Migut.H02247 Erythranthe guttata
Migut.H02248 Erythranthe guttata
MSTRG.15431 Avicennia marina
Nitab4.5_0000091g0380 Nicotiana tabacum
Nitab4.5_0004645g0030 Nicotiana tabacum
Nitab4.5_0007410g0020 Nicotiana tabacum
Nitab4.5_0010422g0010 Nicotiana tabacum
Nn2g14442 Nelumbo nucifera
Oeu012525.1 Olea europaea
Oeu039702.1 Olea europaea
Oeu045801.1 Olea europaea
Os10g0539400 Oryza sativa ssp. japonica
Peaxi162Scf00521g00053 Petunia axillaris
PGR042G2448 Punica granatum
PGSC0003DMG400016729 Solanum tuberosum
PGSC0003DMG400042292 Solanum tuberosum
Phvul.008G240900 Phaseolus vulgaris
Potri.004G080600 Populus trichocarpa
Potri.017G139800 Populus trichocarpa
Pp3c8_14800 Physcomitrium patens
Prupe.3G014700 Prunus persica
Psat2g042880 Pisum sativum
PSO063G7663 Papaver somniferum
PSO724G0684 Papaver somniferum
PSO729G0281 Papaver somniferum
QL02p064340 Quercus lobata
RcHm_v2.0_Chr3g0488741 Rosa chinensis
RcHm_v2.0_Chr4g0398381 Rosa chinensis
RcHm_v2.0_Chr5g0027411 Rosa chinensis
RcHm_v2.0_Chr5g0042551 Rosa chinensis
Rhsim08G0021200 Rhododendron simsii
Sabra04G0053400 Salix brachista
Sabra17G0118000 Salix brachista
SalBow3G1912 Salvia bowleyana
SalBow3G2114 Salvia bowleyana
Sc09g0004500 Simmondsia chinensis
Sed0023234 Sechium edule
SEGI_34462 Sequoiadendron giganteum
SGA_v2.0_scaffold135G34932 Striga asiatica
SHI30090 Sapria himalayana
SMO141G0134 Selaginella moellendorffii
Solyc02g081230.4 Solanum lycopersicum
Solyc03g031850.1 Solanum lycopersicum
Sopen02g025870 Solanum pennellii
Sopen03g005720 Solanum pennellii
Sp3g02250 Schrenkiella parvula
TAR371G0217 Trochodendron aralioides
THA.LOC104827223 Tarenaya hassleriana
Thecc.04G065100 Theobroma cacao
Thhalv10020974m.g Eutrema salsugineum
TPR.G5353 Trifolium pratense
TWI74G1018 Tripterygium wilfordii
unitig_699.g19573 Utricularia gibba
VMungo0647G1176 Vigna mungo
Zm00001eb022160 Zea mays
Zm00001eb393730 Zea mays

User provided reference genes

Program Settings