Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p41430 Brassica napus
Aa31LG5G17170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis
Actinidia13356 Actinidia chinensis
Actinidia14256 Actinidia chinensis
Actinidia18456 Actinidia chinensis
Actinidia40381 Actinidia chinensis
Ah.13g071840 Amaranthus hybridus
AL3G17660 Arabidopsis lyrata
AL3G18870 Arabidopsis lyrata
Aqoxy5G02541 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea
AT3G06610 Arabidopsis thaliana
ATR0693G376 Amborella trichopoda
Atru.chr4.2993 Acer truncatum
Atru.chr4.2994 Acer truncatum
AUR62016211 Chenopodium quinoa
AUR62039277 Chenopodium quinoa
BcaC05g30546 Brassica carinata
BcaC09g47907 Brassica carinata
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus
BolC1t05599H Brassica oleracea
BolC5t34723H Brassica oleracea
BraA01t04428Z Brassica rapa
BraA05t22864Z Brassica rapa
C05p60640 Brassica napus
CAN.G158.24 Capsicum annuum
CAN.G484.64 Capsicum annuum
CANSAT78G2375 Cannabis sativa
CARHR081150 Cardamine hirsuta
Carub.0003s0607 Capsella rubella
Ca_00977_v3 Cicer arietinum L.
CBR_g51449 Chara braunii
Cc03_g00760 Coffea canephora
CDE02G0992 Ceratophyllum demersum
Cfa015310 Carpinus fangiana
Ciclev10006264m.g Citrus clementina
CiPaw.01G138200 Carya illinoinensis
CiPaw.02G074700 Carya illinoinensis
ClCG06G004560 Citrullus lanatus
COL.COLO4_34610 Corchorus olitorius
Cre01.g041000 Chlamydomonas reinhardtii
CsaV3_6G028590 Cucumis sativus L.
CSS0005662 Camellia sinensis var. sinensis
CSS0011224 Camellia sinensis var. sinensis
CSS0039452 Camellia sinensis var. sinensis
DCAR_026983 Daucus carota
Dinv15163 Davidia involucrata
Dinv44282 Davidia involucrata
Duzib052G0826 Durio zibethinus
Duzib212G1042 Durio zibethinus
ECA240G2346 Erigeron canadensis
EL10Ac3g05511 Beta vulgaris
Eucgr.H04047 Eucalyptus grandis
Eucgr.J02724 Eucalyptus grandis
FAN07G0875 Fragaria x ananassa
FAN12G2964 Fragaria x ananassa
FvH4_4g19820 Fragaria vesca
Glyma.07G239500 Glycine max
Glyma.09G035300 Glycine max
Glyma.15G139900 Glycine max
Glyma.17G033800 Glycine max
Gohir.A01G034600 Gossypium hirsutum
Gohir.A02G054900 Gossypium hirsutum
Gohir.D01G023544 Gossypium hirsutum
Gohir.D02G059900 Gossypium hirsutum
Gorai.002G030300 Gossypium raimondii
Gorai.005G067500 Gossypium raimondii
GSVIVG01034987001 Vitis vinifera
HanXRQChr11g0353491 Helianthus annuus
Haze_01302 Corylus avellana
HPP92_016092 Vanilla planifolia
Hund11979 Selenicereus undatus
Lalb_Chr18g0058661 Lupinus albus
Lalb_Chr20g0120821 Lupinus albus
Lj1g0019312 Lotus japonicus
Lj5g0009192 Lotus japonicus
Lj6A691T78 Lonicera japonica
Lj6g0015111 Lotus japonicus
Lsat_1_v5_gn_1_41381 Lactuca sativa
Manes.03G205301 Manihot esculenta
Manes.15G000300 Manihot esculenta
Mapoly0010s0169 Marchantia polymorpha
MBI18_g37558_MAGBIO Magnolia biondii
MCO05G089 Micromonas commoda
MD13G1153200 Malus domestica
MD16G1153600 Malus domestica
Medtr2g034010 Medicago truncatula
MELO3C021266.2 Cucumis melo
Migut.G00065 Erythranthe guttata
MSTRG.10153 Avicennia marina
MSTRG.24823 Avicennia marina
Nitab4.5_0000403g0120 Nicotiana tabacum
Nitab4.5_0000496g0080 Nicotiana tabacum
Nitab4.5_0002150g0070 Nicotiana tabacum
Nitab4.5_0002294g0080 Nicotiana tabacum
Nn3g21734 Nelumbo nucifera
Oeu001169.1 Olea europaea
Oeu039266.2 Olea europaea
Os03g0832300 Oryza sativa ssp. japonica
Peaxi162Scf00228g00326 Petunia axillaris
PGR004G2877 Punica granatum
PGSC0003DMG400004620 Solanum tuberosum
Phvul.003G114500 Phaseolus vulgaris
Phvul.006G118400 Phaseolus vulgaris
Potri.008G105000 Populus trichocarpa
Potri.010G146100 Populus trichocarpa
Pp3c15_12430 Physcomitrium patens
Prupe.1G116800 Prunus persica
Psat1g160840 Pisum sativum
PSO017G4602 Papaver somniferum
PSO063G6303 Papaver somniferum
PSO210G4010 Papaver somniferum
PSO761G0203 Papaver somniferum
QL05p065557 Quercus lobata
RcHm_v2.0_Chr2g0101441 Rosa chinensis
RcHm_v2.0_Chr4g0425361 Rosa chinensis
RcHm_v2.0_Chr5g0023271 Rosa chinensis
Rhsim02G0003600 Rhododendron simsii
Rhsim04G0239300 Rhododendron simsii
Sabra08G0079200 Salix brachista
Sabra10G0112600 Salix brachista
SalBow5G2652 Salvia bowleyana
Sc25g0003240 Simmondsia chinensis
Sed0009015 Sechium edule
Sed0022816 Sechium edule
SEGI_33495 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30073 Striga asiatica
SMO304G0028 Selaginella moellendorffii
Solyc12g099240.2 Solanum lycopersicum
Sopen12g033920 Solanum pennellii
Sp3g05540 Schrenkiella parvula
TAR365G1002 Trochodendron aralioides
TAR636G1364 Trochodendron aralioides
THA.LOC104805014 Tarenaya hassleriana
THA.LOC104818881 Tarenaya hassleriana
Thecc.04G301400 Theobroma cacao
Thhalv10021793m.g Eutrema salsugineum
TPR.G13743 Trifolium pratense
TWI73G0015 Tripterygium wilfordii
unitig_749.g13361 Utricularia gibba
vmacro08042 Vaccinium macrocarpon
vmacro15180 Vaccinium macrocarpon
VMungo0540G1157 Vigna mungo
VMungo1215G0235 Vigna mungo
Zm00001eb211320 Zea mays

User provided reference genes

Program Settings