Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23850 Brassica napus
Actinidia01801 Actinidia chinensis
Actinidia24761 Actinidia chinensis
Actinidia32759 Actinidia chinensis
AL2G41560 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.1DTY35 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AGNB7P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MTRR1H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PJIU2I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QU6Z4C Arachis hypogaea
AT1G79985 Arabidopsis thaliana
Atru.chr1.3264 Acer truncatum
AUR62011626 Chenopodium quinoa
BcaB05g25300 Brassica carinata
BcaC03g16009 Brassica carinata
BcaC08g45282 Brassica carinata
BolC2t09779H Brassica oleracea
BraA02t07378Z Brassica rapa
C02p37640 Brassica napus
CAN.G438.63 Capsicum annuum
CANSAT56G1939 Cannabis sativa
CARHR074500 Cardamine hirsuta
Carub.0002s2753 Capsella rubella
CBR_g53740 Chara braunii
Cc04_g03490 Coffea canephora
CDE02G1346 Ceratophyllum demersum
CDE04G1379 Ceratophyllum demersum
Ciclev10026697m.g Citrus clementina
CiPaw.01G239800 Carya illinoinensis
CiPaw.02G151500 Carya illinoinensis
ClCG09G002180 Citrullus lanatus
COL.COLO4_30360 Corchorus olitorius
Cre10.g423950 Chlamydomonas reinhardtii
CsaV3_7G033130 Cucumis sativus L.
CSS0018986 Camellia sinensis var. sinensis
CSS0024080 Camellia sinensis var. sinensis
CSS0035607 Camellia sinensis var. sinensis
DCAR_007558 Daucus carota
Dinv38056 Davidia involucrata
Duzib192G0809 Durio zibethinus
Duzib235G0181 Durio zibethinus
ECA232G2706 Erigeron canadensis
EL10Ac9g21995 Beta vulgaris
Eucgr.J02995 Eucalyptus grandis
FAN02G3733 Fragaria x ananassa
FAN05G0686 Fragaria x ananassa
FAN09G4279 Fragaria x ananassa
FAN14G0270 Fragaria x ananassa
FAN14G2190 Fragaria x ananassa
FvH4_6g31060 Fragaria vesca
FvH4_6g49470 Fragaria vesca
Glyma.07G006400 Glycine max
Glyma.08G207000 Glycine max
Gohir.A02G121600 Gossypium hirsutum
Gohir.A05G129132 Gossypium hirsutum
Gohir.A09G083300 Gossypium hirsutum
Gohir.A10G079800 Gossypium hirsutum
Gohir.D02G105550 Gossypium hirsutum
Gohir.D03G064100 Gossypium hirsutum
Gohir.D05G128900 Gossypium hirsutum
Gohir.D09G083300 Gossypium hirsutum
Gohir.D10G071700 Gossypium hirsutum
Gorai.002G059200 Gossypium raimondii
Gorai.005G119900 Gossypium raimondii
Gorai.006G098900 Gossypium raimondii
Gorai.009G133000 Gossypium raimondii
Gorai.011G077000 Gossypium raimondii
GSVIVG01017116001 Vitis vinifera
HanXRQChr09g0275291 Helianthus annuus
HanXRQChr16g0501001 Helianthus annuus
HPP92_007677 Vanilla planifolia
Hund00613 Selenicereus undatus
Hund06608 Selenicereus undatus
Lalb_Chr01g0012631 Lupinus albus
Lalb_Chr01g0012641 Lupinus albus
Lalb_Chr04g0262641 Lupinus albus
Lalb_Chr25g0279631 Lupinus albus
Lj3g0009600 Lotus japonicus
Lj3g0025298 Lotus japonicus
Lj9C507G12 Lonicera japonica
Lsat_1_v5_gn_4_103600 Lactuca sativa
Manes.04G123000 Manihot esculenta
Manes.11G047900 Manihot esculenta
Mapoly0002s0050 Marchantia polymorpha
MBI01_g34903_MAGBIO Magnolia biondii
MD09G1213900 Malus domestica
MD17G1196000 Malus domestica
Medtr4g011980 Medicago truncatula
MELO3C024227.2 Cucumis melo
Migut.I00862 Erythranthe guttata
Nitab4.5_0000671g0070 Nicotiana tabacum
Nitab4.5_0002438g0060 Nicotiana tabacum
Nitab4.5_0008982g0010 Nicotiana tabacum
Nitab4.5_0010263g0010 Nicotiana tabacum
Nn2g11793 Nelumbo nucifera
Nn8g39231 Nelumbo nucifera
Oeu025385.1 Olea europaea
Oeu033483.1 Olea europaea
Os01g0593600 Oryza sativa ssp. japonica
Peaxi162Scf00015g00334 Petunia axillaris
PGR102G2548 Punica granatum
PGSC0003DMG400002565 Solanum tuberosum
PGSC0003DMG400028614 Solanum tuberosum
Phvul.010G150900 Phaseolus vulgaris
Potri.001G179500 Populus trichocarpa
Potri.003G056100 Populus trichocarpa
Pp3c14_26240 Physcomitrium patens
Pp3c17_23510 Physcomitrium patens
PRCOL_00001887 Prasinoderma coloniale
Prupe.3G071900 Prunus persica
Psat7g252720 Pisum sativum
PSO063G7160 Papaver somniferum
PSO782G4813 Papaver somniferum
QL05p024322 Quercus lobata
RcHm_v2.0_Chr2g0137751 Rosa chinensis
Rhsim08G0220800 Rhododendron simsii
Rhsim12G0197400 Rhododendron simsii
Sabra01G0147300 Salix brachista
Sabra03G0031500 Salix brachista
SalBow2G1342 Salvia bowleyana
SalBow2G3126 Salvia bowleyana
Sc21g0005090 Simmondsia chinensis
Sed0010677 Sechium edule
SEGI_18303 Sequoiadendron giganteum
SGA_v2.0_scaffold37G14817 Striga asiatica
SGA_v2.0_scaffold4G01995 Striga asiatica
Solyc03g120240.3 Solanum lycopersicum
Solyc12g043060.1 Solanum lycopersicum
Sopen03g039120 Solanum pennellii
Sopen12g022320 Solanum pennellii
Sp5g35760 Schrenkiella parvula
TAR383G0869 Trochodendron aralioides
TAR624G1120 Trochodendron aralioides
TAR626G1436 Trochodendron aralioides
THA.LOC104813561 Tarenaya hassleriana
THA.LOC104821737 Tarenaya hassleriana
Thecc.06G086300 Theobroma cacao
Thhalv10019282m.g Eutrema salsugineum
TPR.G24183 Trifolium pratense
TWI18G1133 Tripterygium wilfordii
TWI75G0398 Tripterygium wilfordii
unitig_22.g5468 Utricularia gibba
unitig_8.g3893 Utricularia gibba
vmacro16949 Vaccinium macrocarpon
vmacro18916 Vaccinium macrocarpon
VMungo0331G0128 Vigna mungo
Zm00001eb161080 Zea mays
Zm00001eb357580 Zea mays

User provided reference genes

Program Settings