Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21160 Brassica napus
Aa31LG2G12480 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis
Actinidia26840 Actinidia chinensis
Ah.02g126930 Amaranthus hybridus
AL7G38570 Arabidopsis lyrata
Aqoxy5G03428 Aquilegia oxysepala
Aqoxy6G02697 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea
AT4G16440 Arabidopsis thaliana
ATR0594G143 Amborella trichopoda
ATR0751G100 Amborella trichopoda
Atru.chr1.2336 Acer truncatum
Atru.chr3.1439 Acer truncatum
AUR62018393 Chenopodium quinoa
AUR62030265 Chenopodium quinoa
BcaC09g50343 Brassica carinata
BcaNung00197 Brassica carinata
BolC1t02590H Brassica oleracea
BraA01t02026Z Brassica rapa
C01p26430 Brassica napus
CAN.G9.5 Capsicum annuum
CANSAT01G2438 Cannabis sativa
CARHR222790 Cardamine hirsuta
Carub.0007s2509 Capsella rubella
Ca_15341_v3 Cicer arietinum L.
CBR_g26339 Chara braunii
Cc09_g00600 Coffea canephora
Cc10_g02370 Coffea canephora
CDE07G0546 Ceratophyllum demersum
Cfa026410 Carpinus fangiana
Ciclev10004004m.g Citrus clementina
Ciclev10015100m.g Citrus clementina
Ciclev10027102m.g Citrus clementina
CiPaw.09G105700 Carya illinoinensis
CiPaw.10G079900 Carya illinoinensis
ClCG01G010690 Citrullus lanatus
Cpa.g.sc27.253 Carica papaya
Cre03.g199800 Chlamydomonas reinhardtii
Cre03.g200550 Chlamydomonas reinhardtii
Cre09.g396600 Chlamydomonas reinhardtii
CsaV3_1G015810 Cucumis sativus L.
CsaV3_UNG059470 Cucumis sativus L.
CSS0011246 Camellia sinensis var. sinensis
CSS0019037 Camellia sinensis var. sinensis
CSS0028023 Camellia sinensis var. sinensis
DCAR_014269 Daucus carota
Dinv01708 Davidia involucrata
Duzib235G0100 Durio zibethinus
ECA248G1395 Erigeron canadensis
EL10Ac3g07283 Beta vulgaris
Eucgr.D01441 Eucalyptus grandis
FAN21G3552 Fragaria x ananassa
FAN25G3815 Fragaria x ananassa
FvH4_3g00590 Fragaria vesca
Glyma.07G266900 Glycine max
Glyma.17G007300 Glycine max
Gohir.A06G204500 Gossypium hirsutum
Gohir.D06G217000 Gossypium hirsutum
Gorai.010G249200 Gossypium raimondii
GSVIVG01005416001 Vitis vinifera
GSVIVG01007214001 Vitis vinifera
HanXRQChr01g0004771 Helianthus annuus
Haze_06979 Corylus avellana
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla
HPP92_013953 Vanilla planifolia
Lalb_Chr20g0119411 Lupinus albus
Lj2C259G8 Lonicera japonica
Lj2g0000431 Lotus japonicus
Lj4g0022097 Lotus japonicus
Lsat_1_v5_gn_0_32381 Lactuca sativa
Lsat_1_v5_gn_6_62021 Lactuca sativa
Lsat_1_v5_gn_6_62041 Lactuca sativa
Lsat_1_v5_gn_6_62060 Lactuca sativa
Manes.09G081692 Manihot esculenta
Mapoly0020s0065 Marchantia polymorpha
MBI19_g25589_MAGBIO Magnolia biondii
MCO07G565 Micromonas commoda
MD00G1058500 Malus domestica
MD10G1336400 Malus domestica
Medtr3g117360 Medicago truncatula
Medtr4g062080 Medicago truncatula
MELO3C000413.2 Cucumis melo
MELO3C025535.2 Cucumis melo
Migut.M01428 Erythranthe guttata
MSTRG.13111 Avicennia marina
MSTRG.14600 Avicennia marina
Nitab4.5_0000318g0050 Nicotiana tabacum
Nitab4.5_0002021g0020 Nicotiana tabacum
Nn1g07472 Nelumbo nucifera
Oeu030104.1 Olea europaea
Oeu057036.1 Olea europaea
Os03g0748700 Oryza sativa ssp. japonica
Peaxi162Scf00488g00925 Petunia axillaris
PGR004G2886 Punica granatum
PGSC0003DMG400025463 Solanum tuberosum
Phvul.003G085301 Phaseolus vulgaris
Potri.006G017000 Populus trichocarpa
Potri.016G008700 Populus trichocarpa
Pp3c6_16630 Physcomitrium patens
PRCOL_00000051 Prasinoderma coloniale
Prupe.4G007100 Prunus persica
Psat5g004720 Pisum sativum
PSO017G3064 Papaver somniferum
PSO339G0319 Papaver somniferum
PSO675G1563 Papaver somniferum
QL05p068327 Quercus lobata
QL05p068818 Quercus lobata
RcHm_v2.0_Chr5g0000801 Rosa chinensis
Rhsim13G0142900 Rhododendron simsii
Sabra06G0012100 Salix brachista
Sabra16G0013000 Salix brachista
SalBow8G4301 Salvia bowleyana
Sc13g0000910 Simmondsia chinensis
Sed0000076 Sechium edule
SEGI_15851 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31506 Striga asiatica
SGA_v2.0_scaffold54G19512 Striga asiatica
SHI24440 Sapria himalayana
SMO356G0034 Selaginella moellendorffii
Solyc08g065990.3 Solanum lycopersicum
Sopen08g019660 Solanum pennellii
Sp7g14970 Schrenkiella parvula
TAR626G0553 Trochodendron aralioides
TAR627G0360 Trochodendron aralioides
Thecc.06G237200 Theobroma cacao
Thhalv10025117m.g Eutrema salsugineum
TPR.G32192 Trifolium pratense
TPR.G35318 Trifolium pratense
TWI38G0401 Tripterygium wilfordii
TWI38G1931 Tripterygium wilfordii
unitig_749.g13618 Utricularia gibba
vmacro03626 Vaccinium macrocarpon
vmacro23178 Vaccinium macrocarpon
VMungo1215G0994 Vigna mungo
Zm00001eb057200 Zea mays
Zm00001eb214910 Zea mays

User provided reference genes

Program Settings