Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p09420 Brassica napus
A03p13760 Brassica napus
A10p13120 Brassica napus
Aa31LG3G11850 Aethionema arabicum
Aa31LG5G11950 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis
Actinidia04992 Actinidia chinensis
Actinidia30384 Actinidia chinensis
Actinidia35413 Actinidia chinensis
Actinidia37138 Actinidia chinensis
Aqoxy1G01190 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea
AT5G51620 Arabidopsis thaliana
AT5G55940 Arabidopsis thaliana
ATR0680G115 Amborella trichopoda
Atru.chr2.3743 Acer truncatum
Atru.chr2.3756 Acer truncatum
Atru.chr3.1978 Acer truncatum
AUR62012198 Chenopodium quinoa
AUR62022831 Chenopodium quinoa
BcaB05g22236 Brassica carinata
BcaB08g35959 Brassica carinata
BcaC04g20187 Brassica carinata
BolC2t07679H Brassica oleracea
BolC3t14040H Brassica oleracea
BolC9t57538H Brassica oleracea
BraA02t06006Z Brassica rapa
BraA03t10679Z Brassica rapa
BraA10t43408Z Brassica rapa
C02p15720 Brassica napus
C03p16160 Brassica napus
C09p46880 Brassica napus
CAN.G160.52 Capsicum annuum
CARHR269310 Cardamine hirsuta
Carub.0008s1627 Capsella rubella
Ca_06409_v3 Cicer arietinum L.
CBR_g17083 Chara braunii
CBR_g45852 Chara braunii
Cc05_g15200 Coffea canephora
Cfa016921 Carpinus fangiana
Ciclev10009430m.g Citrus clementina
CiPaw.11G205900 Carya illinoinensis
CiPaw.12G139900 Carya illinoinensis
ClCG04G005970 Citrullus lanatus
COL.COLO4_07727 Corchorus olitorius
Cpa.g.sc12.130 Carica papaya
Cre05.g240550 Chlamydomonas reinhardtii
CsaV3_4G029170 Cucumis sativus L.
CSS0011268 Camellia sinensis var. sinensis
CSS0046003 Camellia sinensis var. sinensis
DCAR_013248 Daucus carota
Dinv21530 Davidia involucrata
Dinv32219 Davidia involucrata
Duzib170G0808 Durio zibethinus
Duzib213G0469 Durio zibethinus
ECA236G2729 Erigeron canadensis
EL10Ac2g04777 Beta vulgaris
Eucgr.F02035 Eucalyptus grandis
FAN11G3459 Fragaria x ananassa
FAN16G1336 Fragaria x ananassa
FAN21G2115 Fragaria x ananassa
FAN25G1833 Fragaria x ananassa
FvH4_3g42640 Fragaria vesca
Glyma.02G301900 Glycine max
Glyma.14G012300 Glycine max
Gohir.A04G005400 Gossypium hirsutum
Gohir.D05G384300 Gossypium hirsutum
Gorai.009G451100 Gossypium raimondii
GSVIVG01014728001 Vitis vinifera
HanXRQChr04g0114541 Helianthus annuus
HanXRQChr11g0334381 Helianthus annuus
Haze_09852 Corylus avellana
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla
HPP92_001543 Vanilla planifolia
Hund22175 Selenicereus undatus
Lalb_Chr07g0180111 Lupinus albus
Lalb_Chr13g0300511 Lupinus albus
Lj1C893G4 Lonicera japonica
Lj3g0015751 Lotus japonicus
LjContig00081g0027973 Lotus japonicus
Lsat_1_v5_gn_5_190221 Lactuca sativa
Manes.15G058100 Manihot esculenta
Mapoly0118s0025 Marchantia polymorpha
MBI12_g14493_MAGBIO Magnolia biondii
MBI12_g46257_MAGBIO Magnolia biondii
MCO09G115 Micromonas commoda
MD01G1008800 Malus domestica
MD03G1030300 Malus domestica
MD11G1035300 Malus domestica
Medtr5g096260 Medicago truncatula
MELO3C019145.2 Cucumis melo
Migut.H01743 Erythranthe guttata
MSTRG.15804 Avicennia marina
MSTRG.7011 Avicennia marina
Nitab4.5_0000366g0060 Nicotiana tabacum
Nitab4.5_0005478g0050 Nicotiana tabacum
Nitab4.5_0007635g0010 Nicotiana tabacum
Nn1g00202 Nelumbo nucifera
Nn1g00203 Nelumbo nucifera
Nn3g19397 Nelumbo nucifera
Oeu005474.1 Olea europaea
Oeu039419.1 Olea europaea
Oeu046942.1 Olea europaea
Os04g0270200 Oryza sativa ssp. japonica
Peaxi162Scf00324g00322 Petunia axillaris
PGR083G1222 Punica granatum
PGSC0003DMG400008685 Solanum tuberosum
PGSC0003DMG400024208 Solanum tuberosum
Phvul.008G280500 Phaseolus vulgaris
Potri.001G370000 Populus trichocarpa
Potri.001G370200 Populus trichocarpa
Pp3c14_20520 Physcomitrium patens
Pp3c17_17770 Physcomitrium patens
PRCOL_00005958 Prasinoderma coloniale
Prupe.6G026500 Prunus persica
Psat2g006640 Pisum sativum
PSO541G3156 Papaver somniferum
PSO675G6228 Papaver somniferum
QL08p003376 Quercus lobata
RcHm_v2.0_Chr5g0076271 Rosa chinensis
RcHm_v2.0_Chr5g0076591 Rosa chinensis
Rhsim04G0011100 Rhododendron simsii
Rhsim04G0226000 Rhododendron simsii
Rhsim13G0193100 Rhododendron simsii
Rhsim13G0193400 Rhododendron simsii
Rhsim13G0193700 Rhododendron simsii
Sabra16G0243100 Salix brachista
Sc13g0002830 Simmondsia chinensis
Sed0027327 Sechium edule
SEGI_32834 Sequoiadendron giganteum
SGA_v2.0_scaffold42G15954 Striga asiatica
SMO367G0477 Selaginella moellendorffii
Solyc07g009160.3 Solanum lycopersicum
Solyc10g005780.3 Solanum lycopersicum
Sopen07g017150 Solanum pennellii
Sopen10g001750 Solanum pennellii
Sp6g17790 Schrenkiella parvula
TAR374G0816 Trochodendron aralioides
TAR375G0957 Trochodendron aralioides
THA.LOC104813453 Tarenaya hassleriana
Thecc.07G009400 Theobroma cacao
Thhalv10014684m.g Eutrema salsugineum
TPR.G20059 Trifolium pratense
TPR.G36515 Trifolium pratense
TWI75G0785 Tripterygium wilfordii
unitig_746.g26710 Utricularia gibba
vmacro09630 Vaccinium macrocarpon
VMungo0647G1317 Vigna mungo
Zm00001eb086910 Zea mays

User provided reference genes

Program Settings