Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p11140 Brassica napus
A07p33640 Brassica napus
Aa31LG2G3310 Aethionema arabicum
Aa31LG9G17230 Aethionema arabicum
Actinidia15899 Actinidia chinensis
Actinidia15900 Actinidia chinensis
Ah.10g037620 Amaranthus hybridus
Ah.16g101540 Amaranthus hybridus
AL2G25050 Arabidopsis lyrata
AL7G52720 Arabidopsis lyrata
Aqoxy3G04036 Aquilegia oxysepala
Aqoxy4G00894 Aquilegia oxysepala
Aqoxy4G01116 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.00EJBM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.98PLAU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NNR4KN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VL1078 Arachis hypogaea
AT1G66840 Arabidopsis thaliana
AT5G38150 Arabidopsis thaliana
ATR0681G096 Amborella trichopoda
Atru.chr1.1616 Acer truncatum
AUR62009040 Chenopodium quinoa
AUR62023221 Chenopodium quinoa
AUR62023222 Chenopodium quinoa
AUR62023266 Chenopodium quinoa
AUR62039051 Chenopodium quinoa
BcaB03g15228 Brassica carinata
BcaB06g27171 Brassica carinata
BcaC02g09630 Brassica carinata
BcaC08g46129 Brassica carinata
BolC4t26067H Brassica oleracea
BolC6t39105H Brassica oleracea
BraA04t16780Z Brassica rapa
BraA07t30992Z Brassica rapa
C04p44880 Brassica napus
CAN.G625.56 Capsicum annuum
CANSAT11G1581 Cannabis sativa
CARHR058960 Cardamine hirsuta
CARHR214590 Cardamine hirsuta
Carub.0002s1304 Capsella rubella
Carub.0005s1253 Capsella rubella
Ca_08091_v3 Cicer arietinum L.
Cc07_g08530 Coffea canephora
CDE02G1873 Ceratophyllum demersum
CDE08G0600 Ceratophyllum demersum
Cfa007892 Carpinus fangiana
Ciclev10011170m.g Citrus clementina
CiPaw.03G064700 Carya illinoinensis
ClCG11G007710 Citrullus lanatus
COL.COLO4_09375 Corchorus olitorius
Cpa.g.sc170.31 Carica papaya
CsaV3_2G033850 Cucumis sativus L.
CSS0018291 Camellia sinensis var. sinensis
CSS0040498 Camellia sinensis var. sinensis
DCAR_010704 Daucus carota
DCAR_011263 Daucus carota
Dinv34793 Davidia involucrata
Duzib138G0198 Durio zibethinus
ECA232G5032 Erigeron canadensis
ECA238G0899 Erigeron canadensis
EL10Ac2g04529 Beta vulgaris
Eucgr.F02791 Eucalyptus grandis
FAN19G0313 Fragaria x ananassa
FAN26G1687 Fragaria x ananassa
FAN28G0686 Fragaria x ananassa
FvH4_1g25551 Fragaria vesca
Glyma.05G002000 Glycine max
Glyma.18G156550 Glycine max
Glyma.18G294100 Glycine max
Glyma.19G001900 Glycine max
Gohir.A07G175500 Gossypium hirsutum
Gohir.A11G165900 Gossypium hirsutum
Gohir.D07G181800 Gossypium hirsutum
Gohir.D11G172100 Gossypium hirsutum
Gorai.001G202800 Gossypium raimondii
Gorai.007G184500 Gossypium raimondii
GSVIVG01030977001 Vitis vinifera
HanXRQChr07g0190621 Helianthus annuus
HanXRQChr09g0262681 Helianthus annuus
HanXRQChr11g0325151 Helianthus annuus
HanXRQChr12g0357381 Helianthus annuus
Haze_04421 Corylus avellana
Haze_14185 Corylus avellana
Hma1.2p1_0500F.1_g167210 Hydrangea macrophylla
HPP92_008194 Vanilla planifolia
Hund13701 Selenicereus undatus
Lalb_Chr04g0257631 Lupinus albus
Lalb_Chr10g0091451 Lupinus albus
Lj1g0028143 Lotus japonicus
Lj2C439T5 Lonicera japonica
Lj4P184T26 Lonicera japonica
Lsat_1_v5_gn_2_80961 Lactuca sativa
Lsat_1_v5_gn_4_155561 Lactuca sativa
Lsat_1_v5_gn_4_58100 Lactuca sativa
Manes.02G071500 Manihot esculenta
MD09G1256700 Malus domestica
MD17G1250200 Malus domestica
Medtr7g082660 Medicago truncatula
MELO3C008158.2 Cucumis melo
Migut.H00239 Erythranthe guttata
MSTRG.23594 Avicennia marina
Nitab4.5_0000753g0160 Nicotiana tabacum
Nitab4.5_0011439g0010 Nicotiana tabacum
Nn3g17953 Nelumbo nucifera
Nn4g23955 Nelumbo nucifera
Oeu030795.1 Olea europaea
Oeu041980.1 Olea europaea
Os01g0692300 Oryza sativa ssp. japonica
Os05g0550100 Oryza sativa ssp. japonica
Os07g0576600 Oryza sativa ssp. japonica
Peaxi162Scf00877g00001 Petunia axillaris
PGR004G1909 Punica granatum
PGSC0003DMG400026397 Solanum tuberosum
Phvul.004G002200 Phaseolus vulgaris
Phvul.008G008400 Phaseolus vulgaris
Potri.004G095800 Populus trichocarpa
Potri.017G118900 Populus trichocarpa
Prupe.3G148500 Prunus persica
Psat3g097720 Pisum sativum
PSO017G0866 Papaver somniferum
PSO478G4495 Papaver somniferum
QL02p050316 Quercus lobata
QL04p012071 Quercus lobata
QL06p049807 Quercus lobata
RcHm_v2.0_Chr2g0123711 Rosa chinensis
Rhsim10G0072700 Rhododendron simsii
Sabra17G0098200 Salix brachista
SalBow3G3699 Salvia bowleyana
Sc10g0001050 Simmondsia chinensis
Sed0000790 Sechium edule
SGA_v2.0_scaffold202G41468 Striga asiatica
Solyc02g086350.3 Solanum lycopersicum
Sopen02g031010 Solanum pennellii
Sp5g21810 Schrenkiella parvula
Sp7g03910 Schrenkiella parvula
TAR426G0001 Trochodendron aralioides
TAR535G0011 Trochodendron aralioides
THA.LOC104823849 Tarenaya hassleriana
Thecc.04G128800 Theobroma cacao
Thhalv10018290m.g Eutrema salsugineum
Thhalv10027702m.g Eutrema salsugineum
TPR.G16546 Trifolium pratense
TWI53G1125 Tripterygium wilfordii
TWI74G1312 Tripterygium wilfordii
unitig_37.g12374 Utricularia gibba
unitig_899.g14515 Utricularia gibba
vmacro22954 Vaccinium macrocarpon
VMungo0464G1170 Vigna mungo
VMungo1383G0301 Vigna mungo
Zm00001eb156080 Zea mays
Zm00001eb342860 Zea mays

User provided reference genes

Program Settings