Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p02870 Brassica napus
Aa31LG10G3270 Aethionema arabicum
Aa31LG8G7320 Aethionema arabicum
Actinidia05101 Actinidia chinensis
Actinidia36945 Actinidia chinensis
Ah.04g165810 Amaranthus hybridus
AL1G58480 Arabidopsis lyrata
AL3G34290 Arabidopsis lyrata
Aqoxy1G03261 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7UQ7HQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UMZK2D Arachis hypogaea
AT1G50740 Arabidopsis thaliana
AT3G20510 Arabidopsis thaliana
ATR0752G132 Amborella trichopoda
Atru.chr2.3374 Acer truncatum
AUR62015745 Chenopodium quinoa
AUR62020467 Chenopodium quinoa
BcaB04g19111 Brassica carinata
BcaB07g33513 Brassica carinata
BcaC08g43255 Brassica carinata
BcaNung06349 Brassica carinata
BolC5t33098H Brassica oleracea
BolC6t35714H Brassica oleracea
BraA06t23494Z Brassica rapa
C06p06010 Brassica napus
CAN.G1781.4 Capsicum annuum
CAN.G337.120 Capsicum annuum
CANSAT10G0001 Cannabis sativa
CANSAT21G1950 Cannabis sativa
CARHR040840 Cardamine hirsuta
CARHR096270 Cardamine hirsuta
Carub.0003s2047 Capsella rubella
Ca_06312_v3 Cicer arietinum L.
CBR_g50174 Chara braunii
Cc05_g13810 Coffea canephora
CDE05G3279 Ceratophyllum demersum
CDE11G1067 Ceratophyllum demersum
Cfa020361 Carpinus fangiana
Ciclev10009934m.g Citrus clementina
Ciclev10009938m.g Citrus clementina
CiPaw.12G128800 Carya illinoinensis
ClCG05G014360 Citrullus lanatus
COL.COLO4_09650 Corchorus olitorius
Cpa.g.sc97.18 Carica papaya
Cre08.g366000 Chlamydomonas reinhardtii
Cre09.g387838 Chlamydomonas reinhardtii
CsaV3_3G023050 Cucumis sativus L.
CSS0004402 Camellia sinensis var. sinensis
DCAR_010046 Daucus carota
Dinv40745 Davidia involucrata
Duzib170G0778 Durio zibethinus
Duzib170G1055 Durio zibethinus
Duzib213G0117 Durio zibethinus
Duzib268G1286 Durio zibethinus
ECA236G1052 Erigeron canadensis
EL10Ac4g07839 Beta vulgaris
Eucgr.F03460 Eucalyptus grandis
FAN21G0776 Fragaria x ananassa
FvH4_3g22450 Fragaria vesca
Glyma.14G024900 Glycine max
Gohir.A01G079000 Gossypium hirsutum
Gohir.A04G018500 Gossypium hirsutum
Gohir.D01G066100 Gossypium hirsutum
Gohir.D05G367500 Gossypium hirsutum
Gorai.002G088000 Gossypium raimondii
Gorai.009G435100 Gossypium raimondii
GSVIVG01037626001 Vitis vinifera
HanXRQChr09g0242141 Helianthus annuus
HanXRQChr11g0336191 Helianthus annuus
Haze_09660 Corylus avellana
Hma1.2p1_1222F.1_g268220 Hydrangea macrophylla
HPP92_001782 Vanilla planifolia
Hund02067 Selenicereus undatus
Hund23258 Selenicereus undatus
Lalb_Chr04g0248511 Lupinus albus
LjContig00272g0005832 Lotus japonicus
Lsat_1_v5_gn_7_108760 Lactuca sativa
Manes.03G124500 Manihot esculenta
Manes.15G072900 Manihot esculenta
Mapoly0043s0001 Marchantia polymorpha
MBI18_g28089_MAGBIO Magnolia biondii
MBI18_g42744_MAGBIO Magnolia biondii
MBI18_g45255_MAGBIO Magnolia biondii
MCO11G307 Micromonas commoda
MD03G1204200 Malus domestica
MD11G1221000 Malus domestica
Medtr5g092160 Medicago truncatula
MELO3C030728.2 Cucumis melo
Migut.M01776 Erythranthe guttata
MSTRG.6911 Avicennia marina
Nitab4.5_0001393g0120 Nicotiana tabacum
Nitab4.5_0001913g0080 Nicotiana tabacum
Nitab4.5_0003812g0040 Nicotiana tabacum
Nitab4.5_0005048g0090 Nicotiana tabacum
Nn1g03567 Nelumbo nucifera
Nn1g07117 Nelumbo nucifera
Oeu007587.1 Olea europaea
Oeu020120.2 Olea europaea
Os03g0568500 Oryza sativa ssp. japonica
Peaxi162Scf00387g00025 Petunia axillaris
Peaxi162Scf00964g00141 Petunia axillaris
PGR031G1607 Punica granatum
PGSC0003DMG400014390 Solanum tuberosum
PGSC0003DMG400022222 Solanum tuberosum
Phvul.008G266100 Phaseolus vulgaris
Potri.001G424000 Populus trichocarpa
Potri.011G138100 Populus trichocarpa
Pp3c25_1060 Physcomitrium patens
Prupe.4G211200 Prunus persica
Psat2g013600 Pisum sativum
PSO541G5647 Papaver somniferum
PSO675G7988 Papaver somniferum
QL08p010712 Quercus lobata
QL08p011155 Quercus lobata
RcHm_v2.0_Chr5g0039111 Rosa chinensis
RcHm_v2.0_Chr7g0216541 Rosa chinensis
Rhsim06G0216300 Rhododendron simsii
Sabra11G0123700 Salix brachista
Sabra16G0288800 Salix brachista
Sc03g0008650 Simmondsia chinensis
Sc07g0006180 Simmondsia chinensis
Sc16g0006310 Simmondsia chinensis
Sc16g0006330 Simmondsia chinensis
Sc16g0006350 Simmondsia chinensis
Sed0003457 Sechium edule
Sed0022426 Sechium edule
SGA_v2.0_scaffold8G04307 Striga asiatica
SHI10068 Sapria himalayana
SHI31853 Sapria himalayana
SMO270G0016 Selaginella moellendorffii
Solyc07g064470.4 Solanum lycopersicum
Solyc10g006310.3 Solanum lycopersicum
Sopen07g032670 Solanum pennellii
Sopen10g002260 Solanum pennellii
Sp3g18510 Schrenkiella parvula
Sp7g03160 Schrenkiella parvula
TAR627G0539 Trochodendron aralioides
THA.LOC104798774 Tarenaya hassleriana
THA.LOC104817873 Tarenaya hassleriana
Thecc.07G042500 Theobroma cacao
Thhalv10011871m.g Eutrema salsugineum
Thhalv10021782m.g Eutrema salsugineum
TPR.G1165 Trifolium pratense
TWI38G0633 Tripterygium wilfordii
TWI39G0566 Tripterygium wilfordii
unitig_62.g23280 Utricularia gibba
vmacro11732 Vaccinium macrocarpon
VMungo0647G2125 Vigna mungo
Zm00001eb048800 Zea mays
Zm00001eb106080 Zea mays
Zm00001eb219860 Zea mays

User provided reference genes

Program Settings