Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p23590 Brassica napus
Aa31LG6G8820 Aethionema arabicum
Aa31LG9G14850 Aethionema arabicum
Actinidia02574 Actinidia chinensis
Ah.05g178220 Amaranthus hybridus
Aqoxy5G02452 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AKH03T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YL670A Arachis hypogaea
AT1G35620 Arabidopsis thaliana
ATR0752G218 Amborella trichopoda
Atru.chr13.1733 Acer truncatum
Atru.chr2.563 Acer truncatum
AUR62004637 Chenopodium quinoa
AUR62022699 Chenopodium quinoa
BcaB03g13658 Brassica carinata
BcaC05g27723 Brassica carinata
BolC5t32456H Brassica oleracea
BraA05t21227Z Brassica rapa
C05p37040 Brassica napus
CAN.G199.2 Capsicum annuum
CAN.G2.14 Capsicum annuum
CANSAT25G2412 Cannabis sativa
CARHR034420 Cardamine hirsuta
Carub.0001s3321 Capsella rubella
Cc01_g05780 Coffea canephora
CDE04G2694 Ceratophyllum demersum
CDE07G0979 Ceratophyllum demersum
CDE07G1470 Ceratophyllum demersum
Cfa013842 Carpinus fangiana
Ciclev10001144m.g Citrus clementina
CiPaw.07G160700 Carya illinoinensis
CiPaw.08G058600 Carya illinoinensis
ClCG11G008070 Citrullus lanatus
COL.COLO4_23639 Corchorus olitorius
COL.COLO4_38510 Corchorus olitorius
Cpa.g.sc66.30 Carica papaya
Cpa.g.sc66.31 Carica papaya
CsaV3_2G033540 Cucumis sativus L.
CSS0004253 Camellia sinensis var. sinensis
DCAR_001057 Daucus carota
Dinv15070 Davidia involucrata
Dinv41717 Davidia involucrata
Duzib211G0074 Durio zibethinus
Duzib211G0502 Durio zibethinus
ECA247G2093 Erigeron canadensis
EL10Ac1g00092 Beta vulgaris
Eucgr.C02238 Eucalyptus grandis
FAN04G1244 Fragaria x ananassa
FAN04G1967 Fragaria x ananassa
FAN08G2315 Fragaria x ananassa
FAN13G0145 Fragaria x ananassa
FAN13G0537 Fragaria x ananassa
FAN18G3952 Fragaria x ananassa
FvH4_5g30970 Fragaria vesca
Glyma.10G217600 Glycine max
Gohir.A05G250450 Gossypium hirsutum
Gohir.A05G250501 Gossypium hirsutum
Gohir.A05G274200 Gossypium hirsutum
Gohir.A09G116000 Gossypium hirsutum
Gohir.D05G253300 Gossypium hirsutum
Gohir.D05G276400 Gossypium hirsutum
Gohir.D09G113100 Gossypium hirsutum
Gorai.006G130600 Gossypium raimondii
Gorai.009G263700 Gossypium raimondii
Gorai.009G289400 Gossypium raimondii
GSVIVG01034781001 Vitis vinifera
HanXRQChr02g0044281 Helianthus annuus
HanXRQChr04g0109621 Helianthus annuus
Haze_22514 Corylus avellana
Hma1.2p1_0251F.1_g102520 Hydrangea macrophylla
HPP92_019370 Vanilla planifolia
Hund16793 Selenicereus undatus
Lalb_Chr02g0141731 Lupinus albus
Lalb_Chr03g0036111 Lupinus albus
Lalb_Chr06g0161961 Lupinus albus
Lj5g0015319 Lotus japonicus
Lj7C291G3 Lonicera japonica
Lsat_1_v5_gn_1_12401 Lactuca sativa
Manes.02G192700 Manihot esculenta
Mapoly0010s0028 Marchantia polymorpha
MBI09_g41429_MAGBIO Magnolia biondii
MD08G1220700 Malus domestica
MD09G1249700 Malus domestica
MD15G1411400 Malus domestica
Medtr1g096790 Medicago truncatula
MELO3C008127.2 Cucumis melo
Migut.C01261 Erythranthe guttata
Migut.N03354 Erythranthe guttata
MSTRG.1528 Avicennia marina
MSTRG.22459 Avicennia marina
Nitab4.5_0000167g0040 Nicotiana tabacum
Nitab4.5_0000303g0220 Nicotiana tabacum
Nitab4.5_0001579g0120 Nicotiana tabacum
Nitab4.5_0006657g0010 Nicotiana tabacum
Nn1g08376 Nelumbo nucifera
Oeu021211.1 Olea europaea
Oeu037757.1 Olea europaea
Os02g0550300 Oryza sativa ssp. japonica
Os04g0432500 Oryza sativa ssp. japonica
Peaxi162Scf00268g01017 Petunia axillaris
Peaxi162Scf01013g00127 Petunia axillaris
PGR042G1785 Punica granatum
PGSC0003DMG400026074 Solanum tuberosum
PGSC0003DMG400027609 Solanum tuberosum
Phvul.007G088500 Phaseolus vulgaris
Potri.013G111400 Populus trichocarpa
Potri.019G082400 Populus trichocarpa
Pp3c3_31600 Physcomitrium patens
Pp3c4_15240 Physcomitrium patens
Prupe.1G557400 Prunus persica
PSO017G5284 Papaver somniferum
QL02p033402 Quercus lobata
RcHm_v2.0_Chr7g0226321 Rosa chinensis
RcHm_v2.0_Chr7g0226361 Rosa chinensis
Rhsim06G0094600 Rhododendron simsii
Rhsim06G0094700 Rhododendron simsii
Rhsim11G0058000 Rhododendron simsii
Rhsim11G0058200 Rhododendron simsii
Sabra19G0093900 Salix brachista
SalBow1G5438 Salvia bowleyana
SalBow6G2673 Salvia bowleyana
SalBow7G0145 Salvia bowleyana
Sc01g0001820 Simmondsia chinensis
Sed0013291 Sechium edule
Sed0018546 Sechium edule
SEGI_34559 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32495 Striga asiatica
SGA_v2.0_scaffold118G32519 Striga asiatica
SGA_v2.0_scaffold24G10559 Striga asiatica
SHI09019 Sapria himalayana
SMO347G0292 Selaginella moellendorffii
Solyc06g065320.4 Solanum lycopersicum
Solyc11g019920.2 Solanum lycopersicum
Sopen06g023810 Solanum pennellii
Sopen11g010040 Solanum pennellii
Sp1g30340 Schrenkiella parvula
TAR624G1235 Trochodendron aralioides
TAR628G0891 Trochodendron aralioides
THA.LOC104816334 Tarenaya hassleriana
Thecc.08G184800 Theobroma cacao
Thecc.08G185100 Theobroma cacao
Thhalv10010385m.g Eutrema salsugineum
TPR.G15688 Trifolium pratense
TWI34G1187 Tripterygium wilfordii
TWI60G1141 Tripterygium wilfordii
unitig_0.g2131 Utricularia gibba
vmacro12483 Vaccinium macrocarpon
vmacro12484 Vaccinium macrocarpon
VMungo0720G1828 Vigna mungo
Zm00001eb082680 Zea mays
Zm00001eb243460 Zea mays
Zm00001eb422640 Zea mays

User provided reference genes

Program Settings