Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p05180 Brassica napus
Aa31sc241G20 Aethionema arabicum
Actinidia24133 Actinidia chinensis
Ah.01g003210 Amaranthus hybridus
Ah.01g003220 Amaranthus hybridus
AL1G18470 Arabidopsis lyrata
Aqoxy1G01146 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4ZYX81 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PTJZ35 Arachis hypogaea
AT1G08110 Arabidopsis thaliana
ATR0219G018 Amborella trichopoda
Atru.chr3.3541 Acer truncatum
AUR62014938 Chenopodium quinoa
AUR62029203 Chenopodium quinoa
AUR62029205 Chenopodium quinoa
BcaB07g34053 Brassica carinata
BcaB07g34056 Brassica carinata
BcaC01g02577 Brassica carinata
BcaC05g24729 Brassica carinata
BolC3t18580H Brassica oleracea
BolC5t29377H Brassica oleracea
BraA06t23724Z Brassica rapa
C03p63280 Brassica napus
C05p06230 Brassica napus
C07p01580 Brassica napus
C07p01610 Brassica napus
CAN.G546.14 Capsicum annuum
CANSAT78G0379 Cannabis sativa
CARHR007920 Cardamine hirsuta
Carub.0001s0746 Capsella rubella
Ca_19304_v3 Cicer arietinum L.
Ca_19305_v3 Cicer arietinum L.
CBR_g8005 Chara braunii
Cc01_g10500 Coffea canephora
CDE06G2782 Ceratophyllum demersum
Cfa010307 Carpinus fangiana
Cfa025448 Carpinus fangiana
Ciclev10029169m.g Citrus clementina
CiPaw.13G119600 Carya illinoinensis
ClCG03G002770 Citrullus lanatus
COL.COLO4_11061 Corchorus olitorius
Cpa.g.sc65.38 Carica papaya
Cre04.g216100 Chlamydomonas reinhardtii
CsaV3_1G013530 Cucumis sativus L.
CSS0005897 Camellia sinensis var. sinensis
CSS0012572 Camellia sinensis var. sinensis
CSS0024800 Camellia sinensis var. sinensis
CSS0040325 Camellia sinensis var. sinensis
Dinv34726 Davidia involucrata
Duzib150G1276 Durio zibethinus
Duzib170G0342 Durio zibethinus
ECA248G0211 Erigeron canadensis
ECA248G1504 Erigeron canadensis
EL10Ac9g22587 Beta vulgaris
FAN11G0101 Fragaria x ananassa
FAN16G1413 Fragaria x ananassa
FAN21G3549 Fragaria x ananassa
FAN25G1724 Fragaria x ananassa
FvH4_3g30960 Fragaria vesca
Glyma.11G194200 Glycine max
Glyma.11G194300 Glycine max
Glyma.12G079700 Glycine max
Gohir.A03G030000 Gossypium hirsutum
Gohir.A03G030100 Gossypium hirsutum
Gohir.A03G030200 Gossypium hirsutum
Gohir.A13G232600 Gossypium hirsutum
Gohir.D03G138300 Gossypium hirsutum
Gohir.D03G138400 Gossypium hirsutum
Gohir.D03G138500 Gossypium hirsutum
Gohir.D03G138550 Gossypium hirsutum
Gohir.D13G238300 Gossypium hirsutum
Gorai.003G145000 Gossypium raimondii
Gorai.003G145100 Gossypium raimondii
Gorai.003G145200 Gossypium raimondii
Gorai.003G145300 Gossypium raimondii
Gorai.013G269200 Gossypium raimondii
GSVIVG01031499001 Vitis vinifera
HanXRQChr01g0019511 Helianthus annuus
HanXRQChr11g0346211 Helianthus annuus
Haze_23732 Corylus avellana
Hma1.2p1_1647F.1_g295520 Hydrangea macrophylla
HPP92_002620 Vanilla planifolia
HPP92_002674 Vanilla planifolia
HPP92_002675 Vanilla planifolia
Hund01469 Selenicereus undatus
Lalb_Chr03g0027631 Lupinus albus
Lj2A1013G28 Lonicera japonica
Lj3g0013572 Lotus japonicus
Lsat_1_v5_gn_1_62721 Lactuca sativa
Manes.04G014900 Manihot esculenta
Mapoly0033s0083 Marchantia polymorpha
Mapoly0033s0085 Marchantia polymorpha
MBI12_g32344_MAGBIO Magnolia biondii
MBI18_g02639_MAGBIO Magnolia biondii
MD00G1032700 Malus domestica
MD11G1146100 Malus domestica
Medtr4g057685 Medicago truncatula
MELO3C004950.2 Cucumis melo
Migut.D02265 Erythranthe guttata
MSTRG.17890 Avicennia marina
MSTRG.21095 Avicennia marina
Nitab4.5_0001442g0020 Nicotiana tabacum
Nitab4.5_0004993g0010 Nicotiana tabacum
Nn6g35282 Nelumbo nucifera
Oeu018368.2 Olea europaea
Oeu018480.1 Olea europaea
Os05g0295800 Oryza sativa ssp. japonica
Peaxi162Scf00682g00012 Petunia axillaris
PGR102G0165 Punica granatum
PGSC0003DMG400008074 Solanum tuberosum
Phvul.011G084400 Phaseolus vulgaris
Potri.004G214966 Populus trichocarpa
Potri.009G007200 Populus trichocarpa
Pp3c10_11200 Physcomitrium patens
Pp3c14_6610 Physcomitrium patens
Pp3c1_34670 Physcomitrium patens
PRCOL_00001503 Prasinoderma coloniale
Prupe.6G109100 Prunus persica
Psat0s3927g0040 Pisum sativum
PSO063G0803 Papaver somniferum
PSO339G5318 Papaver somniferum
QL01p015669 Quercus lobata
QL01p015675 Quercus lobata
RcHm_v2.0_Chr5g0057511 Rosa chinensis
RcHm_v2.0_Chr5g0057571 Rosa chinensis
Rhsim13G0099200 Rhododendron simsii
Sabra04G0145900 Salix brachista
Sabra04G0146000 Salix brachista
Sabra09G0004200 Salix brachista
SalBow3G2012 Salvia bowleyana
Sc15g0001580 Simmondsia chinensis
Sed0007609 Sechium edule
SEGI_26473 Sequoiadendron giganteum
SEGI_34492 Sequoiadendron giganteum
SGA_v2.0_scaffold116G32194 Striga asiatica
SGA_v2.0_scaffold180G39601 Striga asiatica
SGA_v2.0_scaffold263G45967 Striga asiatica
SMO353G0047 Selaginella moellendorffii
Solyc11g069040.3 Solanum lycopersicum
Sopen11g027750 Solanum pennellii
Sp1g06750 Schrenkiella parvula
TAR633G0460 Trochodendron aralioides
THA.LOC104800584 Tarenaya hassleriana
THA.LOC104808316 Tarenaya hassleriana
THA.LOC104817647 Tarenaya hassleriana
Thecc.09G349000 Theobroma cacao
Thhalv10008645m.g Eutrema salsugineum
TPR.G6148 Trifolium pratense
TWI38G0398 Tripterygium wilfordii
unitig_736.g22404 Utricularia gibba
vmacro03268 Vaccinium macrocarpon
VMungo1127G2270 Vigna mungo
Zm00001eb086540 Zea mays

User provided reference genes

Program Settings