Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Actinidia21442 Actinidia chinensis
Aqoxy1G04226 Aquilegia oxysepala
Aqoxy4G02224 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea
ATR0712G036 Amborella trichopoda
Atru.chr1.2342 Acer truncatum
Atru.chr6.3360 Acer truncatum
CAN.G294.21 Capsicum annuum
CANSAT56G2188 Cannabis sativa
Ca_06456_v3 Cicer arietinum L.
Cc02_g34950 Coffea canephora
Cc09_g04750 Coffea canephora
CDE04G0094 Ceratophyllum demersum
Cfa000070 Carpinus fangiana
Cfa020226 Carpinus fangiana
Ciclev10010582m.g Citrus clementina
Ciclev10017072m.g Citrus clementina
Ciclev10017917m.g Citrus clementina
CiPaw.03G278900 Carya illinoinensis
CiPaw.09G105400 Carya illinoinensis
CiPaw.10G079700 Carya illinoinensis
CiPaw.11G201300 Carya illinoinensis
CiPaw.12G136200 Carya illinoinensis
ClCG09G021090 Citrullus lanatus
COL.COLO4_08493 Corchorus olitorius
Cpa.g.sc211.5 Carica papaya
Cpa.g.sc2750.2 Carica papaya
CsaV3_7G018540 Cucumis sativus L.
CsaV3_7G023710 Cucumis sativus L.
CSS0013569 Camellia sinensis var. sinensis
CSS0019001 Camellia sinensis var. sinensis
CSS0020838 Camellia sinensis var. sinensis
CSS0021588 Camellia sinensis var. sinensis
CSS0022938 Camellia sinensis var. sinensis
CSS0047668 Camellia sinensis var. sinensis
DCAR_002230 Daucus carota
DCAR_019706 Daucus carota
DCAR_030858 Daucus carota
Duzib138G1142 Durio zibethinus
Duzib170G0463 Durio zibethinus
Duzib170G0743 Durio zibethinus
Duzib192G0740 Durio zibethinus
ECA234G3783 Erigeron canadensis
Eucgr.A01045 Eucalyptus grandis
Eucgr.D01438 Eucalyptus grandis
Eucgr.E03889 Eucalyptus grandis
Eucgr.K00650 Eucalyptus grandis
FAN14G5076 Fragaria x ananassa
FvH4_6g41090 Fragaria vesca
Glyma.02G305500 Glycine max
Glyma.07G266600 Glycine max
Glyma.09G012000 Glycine max
Glyma.14G007800 Glycine max
Glyma.15G116700 Glycine max
Glyma.17G007500 Glycine max
Gohir.A01G087700 Gossypium hirsutum
Gohir.A06G155000 Gossypium hirsutum
Gohir.A07G087700 Gossypium hirsutum
Gohir.A07G190700 Gossypium hirsutum
Gohir.D01G074100 Gossypium hirsutum
Gohir.D06G161500 Gossypium hirsutum
Gohir.D07G092600 Gossypium hirsutum
Gohir.D07G197000 Gossypium hirsutum
Gohir.D13G138400 Gossypium hirsutum
Gorai.001G099200 Gossypium raimondii
Gorai.001G220800 Gossypium raimondii
Gorai.002G096900 Gossypium raimondii
Gorai.010G188500 Gossypium raimondii
Gorai.013G155000 Gossypium raimondii
GSVIVG01037785001 Vitis vinifera
Haze_06976 Corylus avellana
Haze_09795 Corylus avellana
Haze_12687 Corylus avellana
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla
HPP92_012227 Vanilla planifolia
HPP92_014035 Vanilla planifolia
Lalb_Chr04g0247291 Lupinus albus
Lalb_Chr04g0247481 Lupinus albus
Lalb_Chr15g0088081 Lupinus albus
Lj2P260T34 Lonicera japonica
Lj4g0015289 Lotus japonicus
Lj6g0021600 Lotus japonicus
LjContig00081g0018270 Lotus japonicus
Lsat_1_v5_gn_5_121620 Lactuca sativa
Lsat_1_v5_gn_7_13860 Lactuca sativa
Lsat_1_v5_gn_7_95461 Lactuca sativa
Manes.03G138300 Manihot esculenta
Manes.12G061300 Manihot esculenta
Manes.13G062900 Manihot esculenta
Manes.15G062700 Manihot esculenta
Medtr2g026510 Medicago truncatula
Medtr4g133720 Medicago truncatula
Medtr5g097300 Medicago truncatula
MELO3C024110.2 Cucumis melo
Migut.M00035 Erythranthe guttata
MSTRG.14923 Avicennia marina
MSTRG.16038 Avicennia marina
MSTRG.6642 Avicennia marina
MSTRG.7149 Avicennia marina
Nn1g03234 Nelumbo nucifera
Nn1g07451 Nelumbo nucifera
Oeu057608.1 Olea europaea
Oeu063642.1 Olea europaea
Oeu064364.1 Olea europaea
Os03g0593100 Oryza sativa ssp. japonica
PGR004G1083 Punica granatum
PGR142G2586 Punica granatum
Phvul.003G085100 Phaseolus vulgaris
Phvul.006G141500 Phaseolus vulgaris
Phvul.008G285200 Phaseolus vulgaris
Potri.001G362000 Populus trichocarpa
Potri.006G016500 Populus trichocarpa
Potri.011G086300 Populus trichocarpa
Potri.014G165000 Populus trichocarpa
Potri.016G009200 Populus trichocarpa
Prupe.3G201300 Prunus persica
Prupe.4G007200 Prunus persica
Prupe.4G234900 Prunus persica
Psat1g178240 Pisum sativum
Psat2g004520 Pisum sativum
Psat4g002280 Pisum sativum
QL05p068371 Quercus lobata
QL05p068872 Quercus lobata
QL08p028591 Quercus lobata
RcHm_v2.0_Chr2g0156651 Rosa chinensis
Rhsim04G0014600 Rhododendron simsii
Rhsim04G0038500 Rhododendron simsii
Rhsim13G0143200 Rhododendron simsii
Sabra06G0011800 Salix brachista
Sabra14G0125700 Salix brachista
Sabra16G0013200 Salix brachista
SalBow7G3719 Salvia bowleyana
Sc05g0009740 Simmondsia chinensis
Sc17g0007950 Simmondsia chinensis
Sed0007585 Sechium edule
Sed0008787 Sechium edule
Sed0024469 Sechium edule
SGA_v2.0_scaffold73G24508 Striga asiatica
TAR627G0453 Trochodendron aralioides
Thecc.01G191000 Theobroma cacao
Thecc.06G236700 Theobroma cacao
Thecc.07G019600 Theobroma cacao
TPR.G10593 Trifolium pratense
TPR.G1320 Trifolium pratense
TPR.G6007 Trifolium pratense
TWI36G0659 Tripterygium wilfordii
VMungo0540G1724 Vigna mungo
VMungo0647G0475 Vigna mungo
VMungo1215G0069 Vigna mungo
Zm00001eb049820 Zea mays

User provided reference genes

Program Settings