Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p05040 Brassica napus
Aa31LG2G12130 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis
Actinidia01063 Actinidia chinensis
Actinidia22921 Actinidia chinensis
Ah.06g192450 Amaranthus hybridus
Ah.16g105210 Amaranthus hybridus
AL6G41010 Arabidopsis lyrata
AL7G43980 Arabidopsis lyrata
Aqoxy3G02973 Aquilegia oxysepala
Aqoxy4G02417 Aquilegia oxysepala
Aqoxy5G04095 Aquilegia oxysepala
Aqoxy5G04183 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea
AT1G54770 Arabidopsis thaliana
AT5G30495 Arabidopsis thaliana
ATR1127G170 Amborella trichopoda
Atru.chr4.3144 Acer truncatum
AUR62015697 Chenopodium quinoa
AUR62020507 Chenopodium quinoa
BcaB04g19639 Brassica carinata
BcaB05g22696 Brassica carinata
BcaC04g19932 Brassica carinata
BcaC04g23715 Brassica carinata
BolC9t53474H Brassica oleracea
BolC9t57816H Brassica oleracea
BraA09t36143Z Brassica rapa
C09p05450 Brassica napus
CAN.G305.38 Capsicum annuum
CANSAT78G0332 Cannabis sativa
CARHR185500 Cardamine hirsuta
Carub.0002s0865 Capsella rubella
Ca_05928_v3 Cicer arietinum L.
Ca_06214_v3 Cicer arietinum L.
CBR_g41139 Chara braunii
Cc00_g15640 Coffea canephora
Cc03_g00150 Coffea canephora
Cfa015727 Carpinus fangiana
Cfa024688 Carpinus fangiana
Ciclev10005920m.g Citrus clementina
CiPaw.02G069300 Carya illinoinensis
ClCG06G002080 Citrullus lanatus
COL.COLO4_34519 Corchorus olitorius
Cpa.g.sc146.25 Carica papaya
Cre03.g194150 Chlamydomonas reinhardtii
CsaV3_6G008150 Cucumis sativus L.
CSS0007787 Camellia sinensis var. sinensis
CSS0022818 Camellia sinensis var. sinensis
CSS0030909 Camellia sinensis var. sinensis
CSS0046364 Camellia sinensis var. sinensis
Dinv18020 Davidia involucrata
Dinv29511 Davidia involucrata
Duzib151G0078 Durio zibethinus
ECA149G0001 Erigeron canadensis
ECA220G0002 Erigeron canadensis
ECA248G3148 Erigeron canadensis
EL10Ac1g01076 Beta vulgaris
EL10Ac4g08571 Beta vulgaris
Eucgr.B03956 Eucalyptus grandis
FAN07G1680 Fragaria x ananassa
FAN12G0616 Fragaria x ananassa
FvH4_4g21490 Fragaria vesca
Glyma.01G218300 Glycine max
Glyma.11G024900 Glycine max
Glyma.14G125600 Glycine max
Gohir.A02G058200 Gossypium hirsutum
Gohir.D02G064000 Gossypium hirsutum
Gorai.005G071900 Gossypium raimondii
GSVIVG01017685001 Vitis vinifera
HanXRQChr09g0238571 Helianthus annuus
Haze_00771 Corylus avellana
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla
HPP92_006011 Vanilla planifolia
Lalb_Chr10g0096421 Lupinus albus
Lalb_Chr17g0338851 Lupinus albus
Lj2g0009432 Lotus japonicus
Lj2g0010517 Lotus japonicus
Lj2g0021207 Lotus japonicus
Lj4g0004970 Lotus japonicus
Lj4g0014561 Lotus japonicus
Lj4g0016234 Lotus japonicus
Lj6C700T16 Lonicera japonica
Lsat_1_v5_gn_1_39920 Lactuca sativa
Lsat_1_v5_gn_6_92581 Lactuca sativa
Manes.03G211700 Manihot esculenta
Manes.11G020900 Manihot esculenta
Mapoly0084s0020 Marchantia polymorpha
MBI03_g01483_MAGBIO Magnolia biondii
MCO05G434 Micromonas commoda
MD07G1065600 Malus domestica
MD13G1140700 Malus domestica
MD16G1136700 Malus domestica
Medtr5g081850 Medicago truncatula
Medtr7g074130 Medicago truncatula
MELO3C035238.2 Cucumis melo
Migut.N00002 Erythranthe guttata
MSTRG.24614 Avicennia marina
Nitab4.5_0000745g0120 Nicotiana tabacum
Nitab4.5_0008086g0030 Nicotiana tabacum
Nn3g16891 Nelumbo nucifera
Oeu022705.1 Olea europaea
Oeu037627.2 Olea europaea
Os02g0730500 Oryza sativa ssp. japonica
Peaxi162Scf00164g00414 Petunia axillaris
PGR031G3538 Punica granatum
PGSC0003DMG400027150 Solanum tuberosum
Phvul.003G045400 Phaseolus vulgaris
Phvul.010G140500 Phaseolus vulgaris
Potri.008G206400 Populus trichocarpa
Potri.010G002100 Populus trichocarpa
Pp3c7_450 Physcomitrium patens
PRCOL_00000839 Prasinoderma coloniale
Prupe.1G105700 Prunus persica
Psat1g042400 Pisum sativum
Psat7g133720 Pisum sativum
PSO063G5897 Papaver somniferum
PSO478G3068 Papaver somniferum
PSO782G4648 Papaver somniferum
PSO832G1751 Papaver somniferum
QL06p014174 Quercus lobata
QL12p004065 Quercus lobata
RcHm_v2.0_Chr4g0427441 Rosa chinensis
RcHm_v2.0_Chr4g0427481 Rosa chinensis
Rhsim04G0248200 Rhododendron simsii
Sabra02G0114900 Salix brachista
Sabra02G0116500 Salix brachista
Sabra08G0150400 Salix brachista
Sc17g0002920 Simmondsia chinensis
Sed0019137 Sechium edule
SEGI_16783 Sequoiadendron giganteum
SEGI_41631 Sequoiadendron giganteum
SGA_v2.0_scaffold49G18399 Striga asiatica
SGA_v2.0_scaffold69G23291 Striga asiatica
SHI04008 Sapria himalayana
SMO139G0013 Selaginella moellendorffii
Solyc05g053220.3 Solanum lycopersicum
Sopen05g031730 Solanum pennellii
Sp2g19960 Schrenkiella parvula
TAR371G0358 Trochodendron aralioides
TAR629G2307 Trochodendron aralioides
THA.LOC104827108 Tarenaya hassleriana
Thecc.04G312600 Theobroma cacao
Thhalv10005420m.g Eutrema salsugineum
TPR.G8061 Trifolium pratense
TWI09G0971 Tripterygium wilfordii
TWI73G0566 Tripterygium wilfordii
unitig_8.g2889 Utricularia gibba
vmacro08011 Vaccinium macrocarpon
VMungo0331G1167 Vigna mungo
Zm00001eb026470 Zea mays
Zm00001eb189970 Zea mays
Zm00001eb219180 Zea mays
Zm00001eb253530 Zea mays

User provided reference genes

Program Settings