Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p13350 Brassica napus
A07p32950 Brassica napus
Aa31LG2G2610 Aethionema arabicum
Actinidia17131 Actinidia chinensis
Actinidia35698 Actinidia chinensis
Ah.04g162850 Amaranthus hybridus
Ah.06g191460 Amaranthus hybridus
AL2G22850 Arabidopsis lyrata
Aqoxy5G02573 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea
AT1G65720 Arabidopsis thaliana
ATR0618G257 Amborella trichopoda
Atru.chr1.2194 Acer truncatum
AUR62004739 Chenopodium quinoa
AUR62037512 Chenopodium quinoa
BcaB03g15322 Brassica carinata
BcaC03g14719 Brassica carinata
BolC2t08298H Brassica oleracea
BolC6t39010H Brassica oleracea
BraA02t06392Z Brassica rapa
BraA07t30922Z Brassica rapa
C01p51750 Brassica napus
C02p21610 Brassica napus
C06p39170 Brassica napus
CANSAT78G0950 Cannabis sativa
CARHR057580 Cardamine hirsuta
CARHR119180 Cardamine hirsuta
Carub.0002s1154 Capsella rubella
Ca_15106_v3 Cicer arietinum L.
Cc07_g12430 Coffea canephora
CDE04G3704 Ceratophyllum demersum
CDE07G1822 Ceratophyllum demersum
Cfa008008 Carpinus fangiana
Ciclev10012875m.g Citrus clementina
CiPaw.03G008900 Carya illinoinensis
CiPaw.03G260700 Carya illinoinensis
CiPaw.07G102900 Carya illinoinensis
CiPaw.13G067300 Carya illinoinensis
ClCG05G011320 Citrullus lanatus
COL.COLO4_00809 Corchorus olitorius
Cpa.g.sc108.18 Carica papaya
CsaV3_3G021140 Cucumis sativus L.
DCAR_000947 Daucus carota
DCAR_002994 Daucus carota
DCAR_014130 Daucus carota
Dinv03197 Davidia involucrata
Dinv19105 Davidia involucrata
Dinv28280 Davidia involucrata
Duzib138G0480 Durio zibethinus
ECA246G3021 Erigeron canadensis
EL10Ac4g08895 Beta vulgaris
Eucgr.F02926 Eucalyptus grandis
FAN19G2236 Fragaria x ananassa
FAN23G2643 Fragaria x ananassa
FAN26G0407 Fragaria x ananassa
FAN28G0174 Fragaria x ananassa
FAN28G0874 Fragaria x ananassa
Glyma.11G204100 Glycine max
Glyma.18G046900 Glycine max
Gohir.A04G103050 Gossypium hirsutum
Gohir.A08G038100 Gossypium hirsutum
Gohir.A12G053100 Gossypium hirsutum
Gohir.D08G048300 Gossypium hirsutum
Gohir.D12G051600 Gossypium hirsutum
Gorai.004G047800 Gossypium raimondii
Gorai.008G054900 Gossypium raimondii
GSVIVG01005258001 Vitis vinifera
HanXRQChr15g0485191 Helianthus annuus
HanXRQChr15g0486441 Helianthus annuus
HanXRQChr16g0532651 Helianthus annuus
Haze_14051 Corylus avellana
Haze_14062 Corylus avellana
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla
HPP92_007306 Vanilla planifolia
HPP92_022519 Vanilla planifolia
Lalb_Chr10g0103991 Lupinus albus
Lalb_Chr17g0345801 Lupinus albus
Lalb_Chr20g0117181 Lupinus albus
Lj1g0007483 Lotus japonicus
Lj5C23T4 Lonicera japonica
Lj6g0008387 Lotus japonicus
Lsat_1_v5_gn_2_72380 Lactuca sativa
Lsat_1_v5_gn_3_68821 Lactuca sativa
Lsat_1_v5_gn_8_113741 Lactuca sativa
Manes.01G125100 Manihot esculenta
Manes.02G082600 Manihot esculenta
MBI03_g05124_MAGBIO Magnolia biondii
MBI03_g34062_MAGBIO Magnolia biondii
MBI06_g28670_MAGBIO Magnolia biondii
MD03G1273600 Malus domestica
MD09G1282600 Malus domestica
MD17G1272400 Malus domestica
Medtr3g064040 Medicago truncatula
MELO3C020251.2 Cucumis melo
Migut.D00607 Erythranthe guttata
Nitab4.5_0000235g0010 Nicotiana tabacum
Nitab4.5_0003016g0040 Nicotiana tabacum
Nitab4.5_0008713g0040 Nicotiana tabacum
Nn4g24900 Nelumbo nucifera
Oeu024775.2 Olea europaea
Oeu034013.1 Olea europaea
Os03g0110300 Oryza sativa ssp. japonica
Os10g0483900 Oryza sativa ssp. japonica
Peaxi162Scf00784g00044 Petunia axillaris
Peaxi162Scf00918g00026 Petunia axillaris
PGR004G1881 Punica granatum
PGSC0003DMG400024083 Solanum tuberosum
PGSC0003DMG400037923 Solanum tuberosum
Phvul.006G084100 Phaseolus vulgaris
Potri.004G078500 Populus trichocarpa
Potri.017G142100 Populus trichocarpa
Prupe.3G011600 Prunus persica
Psat5g143960 Pisum sativum
PSO566G0049 Papaver somniferum
PSO566G0349 Papaver somniferum
PSO782G3544 Papaver somniferum
QL02p054970 Quercus lobata
QL02p056026 Quercus lobata
Rhsim08G0023400 Rhododendron simsii
Sabra04G0052000 Salix brachista
Sabra17G0119000 Salix brachista
SalBow6G0287 Salvia bowleyana
Sc09g0004620 Simmondsia chinensis
Sed0014762 Sechium edule
SEGI_17362 Sequoiadendron giganteum
SGA_v2.0_scaffold247G44889 Striga asiatica
SGA_v2.0_scaffold42G16062 Striga asiatica
SGA_v2.0_scaffold8G04582 Striga asiatica
Solyc03g031950.3 Solanum lycopersicum
Sopen03g005810 Solanum pennellii
Sp5g20670 Schrenkiella parvula
TAR374G0450 Trochodendron aralioides
TAR374G0741 Trochodendron aralioides
TAR622G1006 Trochodendron aralioides
THA.LOC104805666 Tarenaya hassleriana
THA.LOC104822158 Tarenaya hassleriana
THA.LOC104823831 Tarenaya hassleriana
Thecc.04G056200 Theobroma cacao
Thhalv10019176m.g Eutrema salsugineum
TPR.G37307 Trifolium pratense
TWI77G0610 Tripterygium wilfordii
unitig_0.g296 Utricularia gibba
unitig_578.g16656 Utricularia gibba
unitig_85.g27201 Utricularia gibba
unitig_90.g27472 Utricularia gibba
vmacro20421 Vaccinium macrocarpon
vmacro23510 Vaccinium macrocarpon
VMungo0540G1596 Vigna mungo
Zm00001eb000770 Zea mays
Zm00001eb045470 Zea mays
Zm00001eb221440 Zea mays

User provided reference genes

Program Settings