Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p39630 Brassica napus
A03p54580 Brassica napus
A05p33450 Brassica napus
Aa31LG8G3170 Aethionema arabicum
Actinidia08974 Actinidia chinensis
Actinidia24760 Actinidia chinensis
Ah.01g021290 Amaranthus hybridus
AL3G28650 Arabidopsis lyrata
AL776U10010 Arabidopsis lyrata
Aqoxy7G01787 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea
AT3G16000 Arabidopsis thaliana
ATR0037G055 Amborella trichopoda
Atru.chr1.3266 Acer truncatum
AUR62011627 Chenopodium quinoa
AUR62016441 Chenopodium quinoa
BcaB04g18872 Brassica carinata
BcaB04g20887 Brassica carinata
BcaB06g25698 Brassica carinata
BcaC01g03843 Brassica carinata
BcaC09g48580 Brassica carinata
BolC1t04793H Brassica oleracea
BolC1t04795H Brassica oleracea
BolC1t04796H Brassica oleracea
BolC3t17082H Brassica oleracea
BolC5t33791H Brassica oleracea
BraA01t03868Z Brassica rapa
BraA03t13110Z Brassica rapa
BraA03t14525Z Brassica rapa
BraA05t22169Z Brassica rapa
C01p48370 Brassica napus
C03p48030 Brassica napus
C05p50450 Brassica napus
CAN.G438.64 Capsicum annuum
CANSAT56G1090 Cannabis sativa
CARHR091130 Cardamine hirsuta
Carub.0003s1573 Capsella rubella
Ca_19383_v3 Cicer arietinum L.
Cc04_g03480 Coffea canephora
CDE06G0246 Ceratophyllum demersum
CDE07G0275 Ceratophyllum demersum
CDE07G0399 Ceratophyllum demersum
CDE07G1358 Ceratophyllum demersum
Cfa002061 Carpinus fangiana
Ciclev10025273m.g Citrus clementina
CiPaw.01G239700 Carya illinoinensis
CiPaw.02G151400 Carya illinoinensis
ClCG09G002170 Citrullus lanatus
COL.COLO4_28069 Corchorus olitorius
COL.COLO4_30362 Corchorus olitorius
COL.COLO4_36913 Corchorus olitorius
Cpa.g.sc1188.1 Carica papaya
CsaV3_7G033140 Cucumis sativus L.
CSS0005738 Camellia sinensis var. sinensis
CSS0030593 Camellia sinensis var. sinensis
Dinv30514 Davidia involucrata
Dinv38051 Davidia involucrata
Duzib192G0922 Durio zibethinus
Duzib235G0715 Durio zibethinus
ECA248G0988 Erigeron canadensis
EL10Ac9g21996 Beta vulgaris
Eucgr.F03012 Eucalyptus grandis
FAN02G1410 Fragaria x ananassa
FAN05G5776 Fragaria x ananassa
FAN09G1651 Fragaria x ananassa
FAN14G2337 Fragaria x ananassa
FvH4_6g31081 Fragaria vesca
Glyma.11G187500 Glycine max
Glyma.11G237600 Glycine max
Glyma.12G087100 Glycine max
Gohir.A05G129515 Gossypium hirsutum
Gohir.A09G083200 Gossypium hirsutum
Gohir.D05G129000 Gossypium hirsutum
Gohir.D09G083200 Gossypium hirsutum
Gorai.006G098800 Gossypium raimondii
Gorai.009G133100 Gossypium raimondii
GSVIVG01017115001 Vitis vinifera
HanXRQChr09g0275271 Helianthus annuus
HanXRQChr16g0500971 Helianthus annuus
Haze_16437 Corylus avellana
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla
HPP92_019980 Vanilla planifolia
HPP92_020045 Vanilla planifolia
Hund00614 Selenicereus undatus
Hund06610 Selenicereus undatus
Lalb_Chr01g0012651 Lupinus albus
Lalb_Chr04g0262651 Lupinus albus
Lalb_Chr14g0373421 Lupinus albus
Lj3g0008789 Lotus japonicus
Lj5A61G44 Lonicera japonica
Lsat_1_v5_gn_4_103580 Lactuca sativa
Manes.11G047800 Manihot esculenta
MD09G1212900 Malus domestica
MD09G1213300 Malus domestica
MD09G1213400 Malus domestica
MD09G1213500 Malus domestica
MD09G1213800 Malus domestica
MD17G1195700 Malus domestica
Medtr4g054960 Medicago truncatula
MELO3C024228.2 Cucumis melo
Migut.D01034 Erythranthe guttata
MSTRG.9454 Avicennia marina
Nitab4.5_0000671g0060 Nicotiana tabacum
Nitab4.5_0005851g0030 Nicotiana tabacum
Nn2g11790 Nelumbo nucifera
Nn8g39228 Nelumbo nucifera
Oeu033484.1 Olea europaea
Oeu063962.1 Olea europaea
Os01g0180300 Oryza sativa ssp. japonica
Os05g0180400 Oryza sativa ssp. japonica
Peaxi162Scf00015g00335 Petunia axillaris
PGR102G3321 Punica granatum
PGSC0003DMG400002564 Solanum tuberosum
Phvul.011G092000 Phaseolus vulgaris
Potri.001G179600 Populus trichocarpa
Prupe.3G071700 Prunus persica
Psat7g189080 Pisum sativum
PSO063G4770 Papaver somniferum
PSO782G0786 Papaver somniferum
QL05p024308 Quercus lobata
RcHm_v2.0_Chr2g0137781 Rosa chinensis
Rhsim08G0221000 Rhododendron simsii
Rhsim12G0197600 Rhododendron simsii
Sabra01G0147200 Salix brachista
SalBow2G0306 Salvia bowleyana
SalBow2G2616 Salvia bowleyana
Sc21g0005100 Simmondsia chinensis
Sed0016127 Sechium edule
Sed0016916 Sechium edule
SEGI_16798 Sequoiadendron giganteum
SGA_v2.0_scaffold37G14818 Striga asiatica
SGA_v2.0_scaffold4G01996 Striga asiatica
Solyc03g120230.3 Solanum lycopersicum
Sopen03g039110 Solanum pennellii
Sp3g14350 Schrenkiella parvula
TAR624G0442 Trochodendron aralioides
TAR624G1258 Trochodendron aralioides
TAR626G0806 Trochodendron aralioides
TAR636G0382 Trochodendron aralioides
TAR636G1625 Trochodendron aralioides
THA.LOC104817998 Tarenaya hassleriana
Thecc.06G086400 Theobroma cacao
Thhalv10020153m.g Eutrema salsugineum
Thhalv10023042m.g Eutrema salsugineum
TPR.G15588 Trifolium pratense
TWI75G1656 Tripterygium wilfordii
unitig_578.g16688 Utricularia gibba
unitig_744.g24335 Utricularia gibba
vmacro16950 Vaccinium macrocarpon
vmacro18915 Vaccinium macrocarpon
VMungo1127G1134 Vigna mungo
Zm00001eb122200 Zea mays
Zm00001eb283760 Zea mays

User provided reference genes

Program Settings