Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p41300 Brassica napus
A09p03370 Brassica napus
Aa31LG2G5340 Aethionema arabicum
Actinidia35792 Actinidia chinensis
Actinidia36166 Actinidia chinensis
AL5G16540 Arabidopsis lyrata
Aqoxy5G03556 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea
AT3G27310 Arabidopsis thaliana
ATR0824G076 Amborella trichopoda
Atru.chr6.2487 Acer truncatum
AUR62011927 Chenopodium quinoa
AUR62032242 Chenopodium quinoa
BcaC04g23906 Brassica carinata
BcaC06g31006 Brassica carinata
BcaC06g33833 Brassica carinata
BolC7t44152H Brassica oleracea
BraA06t27055Z Brassica rapa
BraA09t35975Z Brassica rapa
BraA09t35976Z Brassica rapa
C07p36360 Brassica napus
C09p03580 Brassica napus
C09p03590 Brassica napus
CAN.G473.59 Capsicum annuum
CANSAT64G0886 Cannabis sativa
CARHR148590 Cardamine hirsuta
Carub.0005s0558 Capsella rubella
Ca_04405_v3 Cicer arietinum L.
CBR_g53680 Chara braunii
Cc07_g00410 Coffea canephora
CDE08G0115 Ceratophyllum demersum
Cfa007277 Carpinus fangiana
Ciclev10003548m.g Citrus clementina
Ciclev10016175m.g Citrus clementina
CiPaw.03G050500 Carya illinoinensis
CiPaw.04G033100 Carya illinoinensis
ClCG11G006850 Citrullus lanatus
COL.COLO4_29276 Corchorus olitorius
Cpa.g.c34704 Carica papaya
Cre10.g443650 Chlamydomonas reinhardtii
CsaV3_6G001200 Cucumis sativus L.
CSS0005098 Camellia sinensis var. sinensis
CSS0019474 Camellia sinensis var. sinensis
CSS0019664 Camellia sinensis var. sinensis
DCAR_011290 Daucus carota
DCAR_021756 Daucus carota
Dinv25693 Davidia involucrata
Dinv33383 Davidia involucrata
Duzib147G1024 Durio zibethinus
Duzib264G0826 Durio zibethinus
ECA232G0338 Erigeron canadensis
ECA246G0472 Erigeron canadensis
EL10Ac5g10455 Beta vulgaris
Eucgr.I01692 Eucalyptus grandis
Eucgr.L03061 Eucalyptus grandis
FAN02G2863 Fragaria x ananassa
FAN05G1873 Fragaria x ananassa
FAN09G3073 Fragaria x ananassa
FAN14G1903 Fragaria x ananassa
FAN24G1590 Fragaria x ananassa
FAN27G0193 Fragaria x ananassa
FvH4_2g09210 Fragaria vesca
FvH4_6g52650 Fragaria vesca
Glyma.16G063100 Glycine max
Glyma.19G082400 Glycine max
Gohir.A05G341700 Gossypium hirsutum
Gohir.A10G160500 Gossypium hirsutum
Gohir.D04G079800 Gossypium hirsutum
Gohir.D10G085100 Gossypium hirsutum
Gorai.011G093000 Gossypium raimondii
Gorai.012G089800 Gossypium raimondii
GSVIVG01001850001 Vitis vinifera
HanXRQChr15g0487081 Helianthus annuus
HanXRQChr17g0549531 Helianthus annuus
Haze_14815 Corylus avellana
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla
HPP92_027613 Vanilla planifolia
HPP92_027614 Vanilla planifolia
HPP92_028037 Vanilla planifolia
Lalb_Chr14g0363051 Lupinus albus
Lj1g0026695 Lotus japonicus
Lj2g0014181 Lotus japonicus
Lj7A605T75 Lonicera japonica
Lsat_1_v5_gn_0_32720 Lactuca sativa
Lsat_1_v5_gn_4_185741 Lactuca sativa
Manes.07G089400 Manihot esculenta
Manes.15G156400 Manihot esculenta
Mapoly0078s0021 Marchantia polymorpha
MBI05_g32279_MAGBIO Magnolia biondii
MD09G1017300 Malus domestica
MD10G1138200 Malus domestica
MD17G1018100 Malus domestica
Medtr0531s0010 Medicago truncatula
Medtr4g103350 Medicago truncatula
Medtr6g022770 Medicago truncatula
Medtr6g023080 Medicago truncatula
MELO3C008218.2 Cucumis melo
Migut.H00060 Erythranthe guttata
MSTRG.24067 Avicennia marina
MSTRG.3110 Avicennia marina
Nitab4.5_0001863g0070 Nicotiana tabacum
Nitab4.5_0008718g0050 Nicotiana tabacum
Nn4g22438 Nelumbo nucifera
Oeu050430.2 Olea europaea
Oeu058758.2 Olea europaea
Os04g0485200 Oryza sativa ssp. japonica
Peaxi162Scf00420g00342 Petunia axillaris
Peaxi162Scf00420g00345 Petunia axillaris
PGR142G2057 Punica granatum
PGSC0003DMG400020270 Solanum tuberosum
Phvul.008G148800 Phaseolus vulgaris
Potri.001G264500 Populus trichocarpa
Potri.001G337533 Populus trichocarpa
Potri.009G059300 Populus trichocarpa
Pp3c7_140 Physcomitrium patens
PRCOL_00003248 Prasinoderma coloniale
Prupe.3G299600 Prunus persica
Prupe.8G176800 Prunus persica
Psat1g084240 Pisum sativum
PSO063G4908 Papaver somniferum
PSO782G2324 Papaver somniferum
PSO782G2536 Papaver somniferum
QL02p072911 Quercus lobata
RcHm_v2.0_Chr2g0174181 Rosa chinensis
RcHm_v2.0_Chr6g0265061 Rosa chinensis
Rhsim08G0046200 Rhododendron simsii
RhsimUnG0241300 Rhododendron simsii
Sabra09G0043700 Salix brachista
Sabra16G0162600 Salix brachista
Sabra16G0218300 Salix brachista
SalBow1G0328 Salvia bowleyana
SalBow1G3920 Salvia bowleyana
Sc03g0007030 Simmondsia chinensis
Sed0000329 Sechium edule
Sed0025843 Sechium edule
SGA_v2.0_scaffold18G08240 Striga asiatica
SMO199G0125 Selaginella moellendorffii
Solyc02g093820.4 Solanum lycopersicum
Sopen02g038460 Solanum pennellii
Sp2g16470 Schrenkiella parvula
TAR371G0552 Trochodendron aralioides
TAR629G3282 Trochodendron aralioides
Thecc.04G027600 Theobroma cacao
Thhalv10004822m.g Eutrema salsugineum
TPR.G2332 Trifolium pratense
TPR.G29003 Trifolium pratense
TWI23G0469 Tripterygium wilfordii
TWI59G0755 Tripterygium wilfordii
unitig_62.g23368 Utricularia gibba
vmacro05924 Vaccinium macrocarpon
vmacro18314 Vaccinium macrocarpon
VMungo1383G3654 Vigna mungo
Zm00001eb055680 Zea mays
Zm00001eb079230 Zea mays
Zm00001eb425170 Zea mays

User provided reference genes

Program Settings