Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p00780 Brassica napus
A03p65840 Brassica napus
A06p45320 Brassica napus
Aa31LG6G15380 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis
Actinidia28864 Actinidia chinensis
Ah.02g122510 Amaranthus hybridus
AL7G12120 Arabidopsis lyrata
Aqoxy6G00796 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea
AT4G39880 Arabidopsis thaliana
ATR0693G394 Amborella trichopoda
Atru.chr4.63 Acer truncatum
AUR62002008 Chenopodium quinoa
AUR62003794 Chenopodium quinoa
BcaNung00909 Brassica carinata
BcaNung02302 Brassica carinata
BcaNung03404 Brassica carinata
BcaNung06392 Brassica carinata
BolC1t00090H Brassica oleracea
BolC7t46695H Brassica oleracea
BraA01t00081Z Brassica rapa
BraA03t15636Z Brassica rapa
C01p00890 Brassica napus
C07p62810 Brassica napus
CAN.G1581.1 Capsicum annuum
CAN.G222.27 Capsicum annuum
CANSAT01G3216 Cannabis sativa
CARHR246820 Cardamine hirsuta
Carub.0007s0181 Capsella rubella
Ca_16525_v3 Cicer arietinum L.
Cc07_g15200 Coffea canephora
CDE10G0605 Ceratophyllum demersum
Cfa002662 Carpinus fangiana
Cfa005597 Carpinus fangiana
Ciclev10026391m.g Citrus clementina
Ciclev10029799m.g Citrus clementina
CiPaw.03G141900 Carya illinoinensis
CiPaw.05G035400 Carya illinoinensis
ClCG10G009000 Citrullus lanatus
COL.COLO4_09965 Corchorus olitorius
Cpa.g.sc974.3 Carica papaya
Cre17.g727350 Chlamydomonas reinhardtii
CsaV3_4G008860 Cucumis sativus L.
CSS0038413 Camellia sinensis var. sinensis
DCAR_001782 Daucus carota
DCAR_014224 Daucus carota
Dinv13189 Davidia involucrata
Dinv21908 Davidia involucrata
Duzib147G1109 Durio zibethinus
Duzib264G0371 Durio zibethinus
ECA232G0540 Erigeron canadensis
EL10Ac6g15105 Beta vulgaris
Eucgr.I00432 Eucalyptus grandis
FAN19G0994 Fragaria x ananassa
FAN23G0429 Fragaria x ananassa
FAN26G0520 Fragaria x ananassa
FAN28G0327 Fragaria x ananassa
FvH4_1g20880 Fragaria vesca
Glyma.05G178600 Glycine max
Glyma.08G135700 Glycine max
Glyma.18G017100 Glycine max
Gohir.A02G143100 Gossypium hirsutum
Gohir.A11G201300 Gossypium hirsutum
Gohir.D03G037250 Gossypium hirsutum
Gohir.D11G221600 Gossypium hirsutum
Gorai.007G238600 Gossypium raimondii
GSVIVG01002466001 Vitis vinifera
HanXRQChr10g0305361 Helianthus annuus
Haze_24931 Corylus avellana
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla
HPP92_019309 Vanilla planifolia
Hund13624 Selenicereus undatus
Hund16286 Selenicereus undatus
Lalb_Chr11g0075381 Lupinus albus
Lalb_Chr12g0203831 Lupinus albus
Lalb_Chr22g0353781 Lupinus albus
Lj4A891T55 Lonicera japonica
Lj4g0016107 Lotus japonicus
Lj6g0027398 Lotus japonicus
Lsat_1_v5_gn_4_141400 Lactuca sativa
Lsat_1_v5_gn_4_15500 Lactuca sativa
Manes.12G134800 Manihot esculenta
Mapoly0065s0037 Marchantia polymorpha
MBI05_g19353_MAGBIO Magnolia biondii
MCO11G885 Micromonas commoda
MD01G1030100 Malus domestica
MD06G1167700 Malus domestica
MD15G1324000 Malus domestica
Medtr3g079680 Medicago truncatula
Medtr3g087190 Medicago truncatula
Medtr8g090225 Medicago truncatula
MELO3C018951.2 Cucumis melo
Migut.H02360 Erythranthe guttata
MSTRG.2568 Avicennia marina
Nitab4.5_0000004g0320 Nicotiana tabacum
Nitab4.5_0000308g0400 Nicotiana tabacum
Nitab4.5_0002169g0010 Nicotiana tabacum
Nitab4.5_0003026g0030 Nicotiana tabacum
Nitab4.5_0006375g0050 Nicotiana tabacum
Nitab4.5_0012380g0020 Nicotiana tabacum
Nn1g04969 Nelumbo nucifera
Nn2g14516 Nelumbo nucifera
Oeu056607.1 Olea europaea
Os03g0388366 Oryza sativa ssp. japonica
Os07g0415200 Oryza sativa ssp. japonica
Peaxi162Scf00611g00021 Petunia axillaris
PGR102G1283 Punica granatum
Phvul.002G256100 Phaseolus vulgaris
Phvul.008G217800 Phaseolus vulgaris
Phvul.L001740 Phaseolus vulgaris
Phvul.L002040 Phaseolus vulgaris
Potri.005G075500 Populus trichocarpa
Potri.007G093100 Populus trichocarpa
Pp3c1_13270 Physcomitrium patens
Prupe.6G187100 Prunus persica
Psat5g090160 Pisum sativum
PSO541G2613 Papaver somniferum
PSO781G0234 Papaver somniferum
QL06p049512 Quercus lobata
QL11p020935 Quercus lobata
QL11p021166 Quercus lobata
RcHm_v2.0_Chr2g0113491 Rosa chinensis
Rhsim08G0010500 Rhododendron simsii
Sabra05G0062000 Salix brachista
SalBow3G4134 Salvia bowleyana
Sc16g0005030 Simmondsia chinensis
Sc20g0005870 Simmondsia chinensis
Sed0012532 Sechium edule
SEGI_37892 Sequoiadendron giganteum
SGA_v2.0_scaffold111G31515 Striga asiatica
SGA_v2.0_scaffold54G19499 Striga asiatica
SHI34078 Sapria himalayana
SMO134G0295 Selaginella moellendorffii
Solyc11g011140.2 Solanum lycopersicum
Sopen11g005900 Solanum pennellii
Sp7g36010 Schrenkiella parvula
TAR381G1658 Trochodendron aralioides
TAR381G1723 Trochodendron aralioides
TAR628G0369 Trochodendron aralioides
THA.LOC104807692 Tarenaya hassleriana
THA.LOC104818439 Tarenaya hassleriana
Thecc.01G101400 Theobroma cacao
Thhalv10026378m.g Eutrema salsugineum
TPR.G17173 Trifolium pratense
TPR.G17855 Trifolium pratense
TPR.G6292 Trifolium pratense
TWI53G1689 Tripterygium wilfordii
TWI77G0829 Tripterygium wilfordii
unitig_749.g13443 Utricularia gibba
vmacro18600 Vaccinium macrocarpon
VMungo0251G0963 Vigna mungo
VMungo0647G0150 Vigna mungo
VMungo1383G1685 Vigna mungo
Zm00001eb120260 Zea mays

User provided reference genes

Program Settings