Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p18420 Brassica napus
Aa31LG1G13150 Aethionema arabicum
Actinidia24220 Actinidia chinensis
Actinidia35466 Actinidia chinensis
AL6G33410 Arabidopsis lyrata
Aqoxy2G01109 Aquilegia oxysepala
Aqoxy4G02752 Aquilegia oxysepala
Aqoxy4G02755 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.72VZ3I Arachis hypogaea
AT5G22390 Arabidopsis thaliana
ATR0820G124 Amborella trichopoda
Atru.chr3.3214 Acer truncatum
AUR62009747 Chenopodium quinoa
AUR62036198 Chenopodium quinoa
BcaB05g22729 Brassica carinata
BcaB08g36435 Brassica carinata
BcaC03g13879 Brassica carinata
BcaC04g19568 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00690 Brassica napus
BolC2t07154H Brassica oleracea
BolC9t58294H Brassica oleracea
BraA02t05656Z Brassica rapa
BraA10t43924Z Brassica rapa
C09p54200 Brassica napus
CAN.G1524.7 Capsicum annuum
CAN.G919.33 Capsicum annuum
CANSAT54G2229 Cannabis sativa
CARHR191140 Cardamine hirsuta
Carub.0006s2014 Capsella rubella
Ca_01655_v3 Cicer arietinum L.
Cc01_g09000 Coffea canephora
CDE04G1878 Ceratophyllum demersum
CDE12G0371 Ceratophyllum demersum
Cfa010005 Carpinus fangiana
Ciclev10028879m.g Citrus clementina
CiPaw.13G134900 Carya illinoinensis
CiPaw.14G099300 Carya illinoinensis
ClCG01G012170 Citrullus lanatus
ClCG02G022240 Citrullus lanatus
Cpa.g.sc195.4 Carica papaya
Cpa.g.sc195.5 Carica papaya
CsaV3_1G015000 Cucumis sativus L.
CsaV3_1G015910 Cucumis sativus L.
CsaV3_6G038370 Cucumis sativus L.
CSS0039489 Camellia sinensis var. sinensis
CSS0048557 Camellia sinensis var. sinensis
DCAR_000195 Daucus carota
DCAR_006166 Daucus carota
DCAR_010339 Daucus carota
DCAR_012203 Daucus carota
Duzib168G0112 Durio zibethinus
Duzib170G0788 Durio zibethinus
EL10Ac7g15833 Beta vulgaris
Eucgr.B03842 Eucalyptus grandis
FAN11G1623 Fragaria x ananassa
FAN21G1025 Fragaria x ananassa
FAN25G2155 Fragaria x ananassa
FvH4_3g25120 Fragaria vesca
Glyma.11G182500 Glycine max
Glyma.12G090100 Glycine max
Glyma.12G185600 Glycine max
Glyma.13G315900 Glycine max
Gohir.A07G110600 Gossypium hirsutum
Gohir.A09G096001 Gossypium hirsutum
Gohir.D07G114300 Gossypium hirsutum
Gohir.D09G095666 Gossypium hirsutum
Gorai.001G122600 Gossypium raimondii
GSVIVG01036110001 Vitis vinifera
HanXRQChr11g0324161 Helianthus annuus
HanXRQChr11g0346861 Helianthus annuus
Haze_23364 Corylus avellana
Hma1.2p1_0587F.1_g184220 Hydrangea macrophylla
HPP92_003213 Vanilla planifolia
HPP92_006359 Vanilla planifolia
HPP92_009743 Vanilla planifolia
HPP92_009770 Vanilla planifolia
Lalb_Chr03g0028141 Lupinus albus
Lj2C965T2 Lonicera japonica
Lj3g0000197 Lotus japonicus
Lj3g0018609 Lotus japonicus
Lsat_1_v5_gn_1_59220 Lactuca sativa
Lsat_1_v5_gn_2_59400 Lactuca sativa
Manes.04G003000 Manihot esculenta
Manes.11G162600 Manihot esculenta
MBI17_g08325_MAGBIO Magnolia biondii
MD03G1147600 Malus domestica
MD11G1166300 Malus domestica
Medtr2g086590 Medicago truncatula
Medtr4g052880 Medicago truncatula
MELO3C004685.2 Cucumis melo
MELO3C014501.2 Cucumis melo
Migut.D02437 Erythranthe guttata
Migut.N02485 Erythranthe guttata
MSTRG.12372 Avicennia marina
MSTRG.18765 Avicennia marina
MSTRG.21036 Avicennia marina
Nitab4.5_0000755g0020 Nicotiana tabacum
Nitab4.5_0001216g0120 Nicotiana tabacum
Nitab4.5_0003661g0010 Nicotiana tabacum
Nitab4.5_0006738g0040 Nicotiana tabacum
Nn2g14192 Nelumbo nucifera
Oeu034007.1 Olea europaea
Oeu035435.1 Olea europaea
Os02g0534000 Oryza sativa ssp. japonica
Os04g0413100 Oryza sativa ssp. japonica
Os11g0153500 Oryza sativa ssp. japonica
Os12g0155100 Oryza sativa ssp. japonica
Peaxi162Scf00040g00012 Petunia axillaris
PGR102G1757 Punica granatum
PGSC0003DMG400005882 Solanum tuberosum
PGSC0003DMG400026354 Solanum tuberosum
Phvul.005G123200 Phaseolus vulgaris
Potri.004G201500 Populus trichocarpa
Potri.009G162800 Populus trichocarpa
Prupe.6G132300 Prunus persica
Psat5g258080 Pisum sativum
PSO339G0545 Papaver somniferum
PSO384G0540 Papaver somniferum
PSO801G0264 Papaver somniferum
QL01p012122 Quercus lobata
RcHm_v2.0_Chr5g0045661 Rosa chinensis
RcHm_v2.0_Chr5g0046341 Rosa chinensis
Rhsim01G0204900 Rhododendron simsii
Rhsim13G0112300 Rhododendron simsii
Sabra09G0127000 Salix brachista
SalBow3G2592 Salvia bowleyana
SalBow6G1431 Salvia bowleyana
SalBow6G5234 Salvia bowleyana
Sc21g0007040 Simmondsia chinensis
Sed0001344 Sechium edule
SEGI_23322 Sequoiadendron giganteum
SEGI_38791 Sequoiadendron giganteum
SEGI_39458 Sequoiadendron giganteum
SGA_v2.0_scaffold177G39416 Striga asiatica
SGA_v2.0_scaffold22G09855 Striga asiatica
SGA_v2.0_scaffold295G47519 Striga asiatica
Solyc06g074270.1 Solanum lycopersicum
Solyc11g068530.1 Solanum lycopersicum
Sopen06g030720 Solanum pennellii
Sopen11g027250 Solanum pennellii
Sp6g22860 Schrenkiella parvula
TAR633G0983 Trochodendron aralioides
TAR636G1327 Trochodendron aralioides
THA.LOC104799551 Tarenaya hassleriana
Thecc.09G281500 Theobroma cacao
Thhalv10014710m.g Eutrema salsugineum
TPR.G17219 Trifolium pratense
TPR.G4535 Trifolium pratense
TWI31G0739 Tripterygium wilfordii
TWI75G1018 Tripterygium wilfordii
TWI79G1499 Tripterygium wilfordii
unitig_27.g25015 Utricularia gibba
unitig_699.g19154 Utricularia gibba
VMungo1080G1565 Vigna mungo
Zm00001eb083800 Zea mays
Zm00001eb092610 Zea mays
Zm00001eb242780 Zea mays

User provided reference genes

Program Settings