Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p20330 Brassica napus
Aa31LG2G13050 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2176 Anthoceros agrestis
Actinidia10859 Actinidia chinensis
Actinidia31498 Actinidia chinensis
Ah.12g054050 Amaranthus hybridus
AL7G37750 Arabidopsis lyrata
AL7G37770 Arabidopsis lyrata
Aqoxy3G02685 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.F9ZABX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XA3BYX Arachis hypogaea
AT4G16970 Arabidopsis thaliana
ATR0665G378 Amborella trichopoda
Atru.chr9.1225 Acer truncatum
AUR62007157 Chenopodium quinoa
AUR62018854 Chenopodium quinoa
BcaC06g35832 Brassica carinata
BcaC09g50431 Brassica carinata
BcaNung00138 Brassica carinata
BolC1t02501H Brassica oleracea
BolC7t41504H Brassica oleracea
BolC7t41506H Brassica oleracea
BolC7t41510H Brassica oleracea
BraA01t01963Z Brassica rapa
C01p25500 Brassica napus
C07p10420 Brassica napus
CAN.G761.19 Capsicum annuum
CANSAT21G1292 Cannabis sativa
CANSAT25G1576 Cannabis sativa
CARHR223550 Cardamine hirsuta
CARHR290510 Cardamine hirsuta
Carub.0007s2444 Capsella rubella
Ca_14806_v3 Cicer arietinum L.
CBR_g3704 Chara braunii
Cc08_g11470 Coffea canephora
CDE04G0694 Ceratophyllum demersum
CDE04G3600 Ceratophyllum demersum
CDE12G0423 Ceratophyllum demersum
Cfa024948 Carpinus fangiana
Ciclev10018937m.g Citrus clementina
CiPaw.11G069600 Carya illinoinensis
ClCG06G002450 Citrullus lanatus
COL.COLO4_07512 Corchorus olitorius
Cpa.g.sc42.59 Carica papaya
CsaV3_6G008680 Cucumis sativus L.
CSS0000512 Camellia sinensis var. sinensis
CSS0009672 Camellia sinensis var. sinensis
CSS0020169 Camellia sinensis var. sinensis
DCAR_004592 Daucus carota
DCAR_005580 Daucus carota
Dinv28865 Davidia involucrata
Dinv28866 Davidia involucrata
Dinv44053 Davidia involucrata
Duzib068G0094 Durio zibethinus
Duzib205G1146 Durio zibethinus
ECA240G1307 Erigeron canadensis
EL10Ac5g12285 Beta vulgaris
Eucgr.D02127 Eucalyptus grandis
FAN01G2950 Fragaria x ananassa
FAN03G1267 Fragaria x ananassa
FAN06G0382 Fragaria x ananassa
FAN06G4364 Fragaria x ananassa
FAN08G0032 Fragaria x ananassa
FAN10G2341 Fragaria x ananassa
FAN10G2859 Fragaria x ananassa
FAN13G0010 Fragaria x ananassa
FAN13G1547 Fragaria x ananassa
FAN18G0798 Fragaria x ananassa
FvH4_5g20210 Fragaria vesca
FvH4_7g10370 Fragaria vesca
Glyma.03G109300 Glycine max
Glyma.07G115800 Glycine max
Gohir.A08G165500 Gossypium hirsutum
Gohir.A11G028800 Gossypium hirsutum
Gohir.D08G184200 Gossypium hirsutum
Gohir.D11G027300 Gossypium hirsutum
Gorai.004G193500 Gossypium raimondii
Gorai.007G029800 Gossypium raimondii
GSVIVG01002113001 Vitis vinifera
GSVIVG01005722001 Vitis vinifera
GSVIVG01018293001 Vitis vinifera
HanXRQChr13g0418201 Helianthus annuus
Haze_07975 Corylus avellana
Hma1.2p1_0227F.1_g096410 Hydrangea macrophylla
HPP92_025687 Vanilla planifolia
Hund14485 Selenicereus undatus
Lalb_Chr12g0210541 Lupinus albus
Lj2C227T10 Lonicera japonica
Lj3g0024575 Lotus japonicus
Lsat_1_v5_gn_3_85361 Lactuca sativa
Lsat_1_v5_gn_6_93760 Lactuca sativa
Manes.01G087300 Manihot esculenta
Mapoly0004s0300 Marchantia polymorpha
MBI04_g28359_MAGBIO Magnolia biondii
MD04G1051700 Malus domestica
MD06G1048400 Malus domestica
MD07G1109800 Malus domestica
Medtr8g007150 Medicago truncatula
MELO3C022287.2 Cucumis melo
Migut.E00822 Erythranthe guttata
MSTRG.1950 Avicennia marina
Nitab4.5_0000500g0120 Nicotiana tabacum
Nitab4.5_0007628g0030 Nicotiana tabacum
Nn1g08279 Nelumbo nucifera
Oeu037379.1 Olea europaea
Oeu054277.1 Olea europaea
Os10g0563500 Oryza sativa ssp. japonica
Os10g0563550 Oryza sativa ssp. japonica
Peaxi162Scf00446g00213 Petunia axillaris
PGR031G0135 Punica granatum
PGSC0003DMG400026251 Solanum tuberosum
Phvul.010G046800 Phaseolus vulgaris
Potri.001G151900 Populus trichocarpa
Potri.003G082600 Populus trichocarpa
Pp3c24_4600 Physcomitrium patens
PRCOL_00000175 Prasinoderma coloniale
Prupe.5G058600 Prunus persica
Psat4g223720 Pisum sativum
PSO063G2875 Papaver somniferum
PSO782G5445 Papaver somniferum
QL04p029927 Quercus lobata
QL12p009065 Quercus lobata
RcHm_v2.0_Chr1g0348071 Rosa chinensis
RcHm_v2.0_Chr7g0205281 Rosa chinensis
Rhsim07G0118300 Rhododendron simsii
Rhsim07G0118500 Rhododendron simsii
Sabra01G0121600 Salix brachista
Sabra03G0053300 Salix brachista
SalBow1G1528 Salvia bowleyana
SalBow1G8649 Salvia bowleyana
Sc01g0008080 Simmondsia chinensis
Sed0025323 Sechium edule
SEGI_14133 Sequoiadendron giganteum
SGA_v2.0_scaffold20G09239 Striga asiatica
SHI20405 Sapria himalayana
SHI20407 Sapria himalayana
SHI20408 Sapria himalayana
SHI20412 Sapria himalayana
SMO364G0022 Selaginella moellendorffii
Solyc08g077990.3 Solanum lycopersicum
Sopen08g026500 Solanum pennellii
Sp7g17210 Schrenkiella parvula
TAR004G0003 Trochodendron aralioides
TAR374G0761 Trochodendron aralioides
TAR374G0819 Trochodendron aralioides
TAR375G0350 Trochodendron aralioides
THA.LOC104807924 Tarenaya hassleriana
Thecc.03G242900 Theobroma cacao
Thhalv10024346m.g Eutrema salsugineum
TPR.G32121 Trifolium pratense
TPR.G32138 Trifolium pratense
TPR.G39363 Trifolium pratense
TWI15G0872 Tripterygium wilfordii
TWI60G0774 Tripterygium wilfordii
vmacro14128 Vaccinium macrocarpon
VMungo0331G1450 Vigna mungo
Zm00001eb023800 Zea mays
Zm00001eb391030 Zea mays

User provided reference genes

Program Settings