Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
Aa31LG6G7980 Aethionema arabicum
Aa31LG6G7990 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5065 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.715 Anthoceros agrestis
Ah.08g210120 Amaranthus hybridus
AL1G47900 Arabidopsis lyrata
AL7G28150 Arabidopsis lyrata
Aqoxy5G04375 Aquilegia oxysepala
Aqoxy7G00153 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.41JFP3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GWI8GZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z20ZUZ Arachis hypogaea
AT1G33520 Arabidopsis thaliana
AT4G25020 Arabidopsis thaliana
ATR0579G060 Amborella trichopoda
Atru.chr6.2109 Acer truncatum
AUR62008525 Chenopodium quinoa
AUR62019030 Chenopodium quinoa
BcaB03g13695 Brassica carinata
BcaC05g27801 Brassica carinata
BolC5t32530H Brassica oleracea
BraA05t21310Z Brassica rapa
C05p37990 Brassica napus
CAN.G195.29 Capsicum annuum
CANSAT56G0747 Cannabis sativa
CANSAT56G1258 Cannabis sativa
CARHR032960 Cardamine hirsuta
CARHR232410 Cardamine hirsuta
Carub.0001s3171 Capsella rubella
Carub.0007s1601 Capsella rubella
Ca_12422_v3 Cicer arietinum L.
Ca_12425_v3 Cicer arietinum L.
CBR_g50444 Chara braunii
CBR_g54973 Chara braunii
Cc01_g17290 Coffea canephora
Cc02_g26180 Coffea canephora
Cc04_g13460 Coffea canephora
Cc04_g13510 Coffea canephora
Cc11_g00690 Coffea canephora
CDE02G0510 Ceratophyllum demersum
CDE04G1584 Ceratophyllum demersum
CDE11G0183 Ceratophyllum demersum
Cfa012902 Carpinus fangiana
Cfa012912 Carpinus fangiana
Cfa021184 Carpinus fangiana
Ciclev10001464m.g Citrus clementina
CiPaw.11G104400 Carya illinoinensis
ClCG07G002440 Citrullus lanatus
COL.COLO4_08177 Corchorus olitorius
COL.COLO4_28616 Corchorus olitorius
COL.COLO4_35853 Corchorus olitorius
Cpa.g.sc21.98 Carica papaya
Cre06.g303500 Chlamydomonas reinhardtii
CsaV3_3G030260 Cucumis sativus L.
CSS0029181 Camellia sinensis var. sinensis
CSS0036523 Camellia sinensis var. sinensis
DCAR_017646 Daucus carota
DCAR_023418 Daucus carota
Dinv09440 Davidia involucrata
Duzib177G0040 Durio zibethinus
Duzib268G1853 Durio zibethinus
ECA233G3653 Erigeron canadensis
ECA248G3611 Erigeron canadensis
Eucgr.E01208 Eucalyptus grandis
FAN11G0972 Fragaria x ananassa
FAN11G3304 Fragaria x ananassa
FAN16G0157 Fragaria x ananassa
FAN16G2201 Fragaria x ananassa
FAN21G2024 Fragaria x ananassa
FvH4_3g22140 Fragaria vesca
FvH4_3g22160 Fragaria vesca
Glyma.07G197900 Glycine max
Glyma.09G283500 Glycine max
Glyma.20G002200 Glycine max
Gohir.A05G253900 Gossypium hirsutum
Gohir.D05G255680 Gossypium hirsutum
Gorai.009G267300 Gossypium raimondii
HanXRQChr03g0083281 Helianthus annuus
HanXRQChr04g0098951 Helianthus annuus
Haze_21257 Corylus avellana
Hma1.2p1_0127F.1_g059630 Hydrangea macrophylla
HPP92_014435 Vanilla planifolia
Hund14323 Selenicereus undatus
Lalb_Chr20g0109201 Lupinus albus
Lj2g0021533 Lotus japonicus
Lj8P410T5 Lonicera japonica
Lsat_1_v5_gn_6_80001 Lactuca sativa
Manes.03G127100 Manihot esculenta
Manes.03G127200 Manihot esculenta
Manes.15G074001 Manihot esculenta
Mapoly0027s0115 Marchantia polymorpha
MBI12_g26901_MAGBIO Magnolia biondii
MCO10G255 Micromonas commoda
MD03G1208000 Malus domestica
MD11G1222200 Malus domestica
Medtr1g038340 Medicago truncatula
MELO3C022741.2 Cucumis melo
Migut.A00508 Erythranthe guttata
MSTRG.11833 Avicennia marina
Nitab4.5_0000907g0020 Nicotiana tabacum
Nitab4.5_0001131g0030 Nicotiana tabacum
Nn3g17595 Nelumbo nucifera
Nn5g27612 Nelumbo nucifera
Oeu028098.1 Olea europaea
Oeu048006.1 Olea europaea
Os03g0253500 Oryza sativa ssp. japonica
Peaxi162Scf00445g00102 Petunia axillaris
PGR042G2393 Punica granatum
PGSC0003DMG400029573 Solanum tuberosum
Phvul.003G004000 Phaseolus vulgaris
Phvul.003G026500 Phaseolus vulgaris
Potri.001G129700 Populus trichocarpa
Potri.003G104200 Populus trichocarpa
Pp3c1_630 Physcomitrium patens
PRCOL_00000575 Prasinoderma coloniale
Prupe.4G208700 Prunus persica
Prupe.4G208800 Prunus persica
Psat6g099680 Pisum sativum
PSO017G4650 Papaver somniferum
PSO170G2332 Papaver somniferum
PSO541G6108 Papaver somniferum
PSO675G6986 Papaver somniferum
QL06p018920 Quercus lobata
QL12p001966 Quercus lobata
QL93p0146_0040 Quercus lobata
RcHm_v2.0_Chr5g0037991 Rosa chinensis
RcHm_v2.0_Chr5g0038051 Rosa chinensis
Rhsim01G0089200 Rhododendron simsii
Sabra01G0100000 Salix brachista
Sabra03G0071200 Salix brachista
Sabra05G0101600 Salix brachista
Sabra05G0101700 Salix brachista
SalBow4G0115 Salvia bowleyana
Sc07g0008270 Simmondsia chinensis
Sed0007980 Sechium edule
Sed0022149 Sechium edule
SEGI_34794 Sequoiadendron giganteum
SGA_v2.0_scaffold27G11714 Striga asiatica
SHI08932 Sapria himalayana
SMO347G0031 Selaginella moellendorffii
Solyc08g074570.1 Solanum lycopersicum
Sopen08g023180 Solanum pennellii
Sp1g28990 Schrenkiella parvula
TAR381G1314 Trochodendron aralioides
TAR629G0838 Trochodendron aralioides
THA.LOC104815806 Tarenaya hassleriana
Thecc.04G269400 Theobroma cacao
Thhalv10007601m.g Eutrema salsugineum
Thhalv10027298m.g Eutrema salsugineum
TPR.G29795 Trifolium pratense
TWI32G1304 Tripterygium wilfordii
TWI34G1093 Tripterygium wilfordii
TWI74G0109 Tripterygium wilfordii
unitig_748.g8160 Utricularia gibba
vmacro05137 Vaccinium macrocarpon
VMungo0251G2350 Vigna mungo
VMungo0720G3103 Vigna mungo
Zm00001eb398470 Zea mays

User provided reference genes

Program Settings