Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p17400 Brassica napus
A04p23880 Brassica napus
A05p14540 Brassica napus
Aa31LG5G5790 Aethionema arabicum
Actinidia10974 Actinidia chinensis
Actinidia11133 Actinidia chinensis
AL4G26310 Arabidopsis lyrata
Aqoxy1G03185 Aquilegia oxysepala
Aqoxy4G00427 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.47XKI7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65XND6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B2LHN7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.P6YWRU Arachis hypogaea
AT2G31130 Arabidopsis thaliana
ATR0602G009 Amborella trichopoda
Atru.chr6.2814 Acer truncatum
AUR62038920 Chenopodium quinoa
BcaB01g04062 Brassica carinata
BcaB02g10364 Brassica carinata
BcaB06g28418 Brassica carinata
BcaB06g28496 Brassica carinata
BcaC01g05977 Brassica carinata
BcaC02g11198 Brassica carinata
BolC3t14433H Brassica oleracea
BolC4t23467H Brassica oleracea
BolC4t27542H Brassica oleracea
BraA03t11011Z Brassica rapa
BraA04t17911Z Brassica rapa
BraA05t20385Z Brassica rapa
C03p20530 Brassica napus
C04p19350 Brassica napus
C04p60430 Brassica napus
CAN.G318.9 Capsicum annuum
CAN.G456.28 Capsicum annuum
CANSAT64G2099 Cannabis sativa
CARHR124710 Cardamine hirsuta
Carub.0004s1239 Capsella rubella
Ca_01462_v3 Cicer arietinum L.
Ca_18892_v3 Cicer arietinum L.
Cc05_g08130 Coffea canephora
Ciclev10015391m.g Citrus clementina
CiPaw.04G131700 Carya illinoinensis
ClCG02G017950 Citrullus lanatus
COL.COLO4_33545 Corchorus olitorius
Cpa.g.sc209.31 Carica papaya
CsaV3_6G018840 Cucumis sativus L.
CSS0006802 Camellia sinensis var. sinensis
CSS0011468 Camellia sinensis var. sinensis
CSS0015057 Camellia sinensis var. sinensis
CSS0018366 Camellia sinensis var. sinensis
DCAR_013061 Daucus carota
Dinv03911 Davidia involucrata
Dinv15459 Davidia involucrata
Duzib147G1211 Durio zibethinus
Duzib192G1010 Durio zibethinus
Duzib235G1377 Durio zibethinus
EL10Ac9g20912 Beta vulgaris
Eucgr.A01904 Eucalyptus grandis
FAN02G0553 Fragaria x ananassa
FAN05G5668 Fragaria x ananassa
FAN09G1171 Fragaria x ananassa
FAN09G4605 Fragaria x ananassa
FAN14G3451 Fragaria x ananassa
FvH4_6g27121 Fragaria vesca
Glyma.12G122400 Glycine max
Glyma.12G209700 Glycine max
Glyma.13G291600 Glycine max
Glyma.18G179200 Glycine max
Gohir.A10G031400 Gossypium hirsutum
Gohir.A10G153900 Gossypium hirsutum
Gohir.D06G136800 Gossypium hirsutum
Gohir.D10G032200 Gossypium hirsutum
Gohir.D10G112200 Gossypium hirsutum
Gorai.010G159000 Gossypium raimondii
Gorai.011G033900 Gossypium raimondii
Gorai.011G124100 Gossypium raimondii
GSVIVG01020684001 Vitis vinifera
HanXRQChr17g0557991 Helianthus annuus
Haze_13348 Corylus avellana
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla
Hund00914 Selenicereus undatus
Hund07832 Selenicereus undatus
Lalb_Chr03g0029881 Lupinus albus
Lalb_Chr14g0367401 Lupinus albus
Lalb_Chr19g0134931 Lupinus albus
Lalb_Chr19g0134941 Lupinus albus
Lj3g0000357 Lotus japonicus
Lj3g0023253 Lotus japonicus
Lsat_1_v5_gn_8_140081 Lactuca sativa
Manes.13G138000 Manihot esculenta
MBI06_g25989_MAGBIO Magnolia biondii
MBI07_g21399_MAGBIO Magnolia biondii
MD09G1239700 Malus domestica
MD17G1232800 Malus domestica
Medtr2g091180 Medicago truncatula
Medtr4g079720 Medicago truncatula
MELO3C019761.2 Cucumis melo
Migut.M00253 Erythranthe guttata
MSTRG.14316 Avicennia marina
MSTRG.15104 Avicennia marina
Nitab4.5_0000537g0100 Nicotiana tabacum
Nitab4.5_0003827g0050 Nicotiana tabacum
Nitab4.5_0006772g0010 Nicotiana tabacum
Nitab4.5_0010797g0050 Nicotiana tabacum
Nn1g09097 Nelumbo nucifera
Oeu013689.1 Olea europaea
Oeu032703.1 Olea europaea
Peaxi162Scf00384g00511 Petunia axillaris
Peaxi162Scf00469g00139 Petunia axillaris
PGR042G0272 Punica granatum
PGSC0003DMG400007808 Solanum tuberosum
PGSC0003DMG400020429 Solanum tuberosum
Phvul.004G086900 Phaseolus vulgaris
Phvul.005G096100 Phaseolus vulgaris
Phvul.011G134500 Phaseolus vulgaris
Potri.013G118000 Populus trichocarpa
Potri.019G089900 Populus trichocarpa
Prupe.3G122900 Prunus persica
Psat5g276160 Pisum sativum
Psat7g166160 Pisum sativum
PSO541G0319 Papaver somniferum
PSO675G1487 Papaver somniferum
QL08p041398 Quercus lobata
RcHm_v2.0_Chr2g0128471 Rosa chinensis
RcHm_v2.0_Chr2g0128481 Rosa chinensis
RcHm_v2.0_Chr2g0129081 Rosa chinensis
Rhsim04G0073900 Rhododendron simsii
Rhsim06G0133100 Rhododendron simsii
Sabra13G0099900 Salix brachista
Sabra19G0103600 Salix brachista
Sabra19G0103700 Salix brachista
SalBow7G0314 Salvia bowleyana
SalBow7G0936 Salvia bowleyana
Sc06g0009110 Simmondsia chinensis
Sc21g0003700 Simmondsia chinensis
Sed0004710 Sechium edule
Sed0020403 Sechium edule
SGA_v2.0_scaffold9G04806 Striga asiatica
Solyc07g053320.4 Solanum lycopersicum
Solyc12g010830.2 Solanum lycopersicum
Sopen07g027280 Solanum pennellii
Sopen12g006190 Solanum pennellii
Sp4g13600 Schrenkiella parvula
TAR624G1329 Trochodendron aralioides
TAR626G0367 Trochodendron aralioides
TAR629G2655 Trochodendron aralioides
THA.LOC104800859 Tarenaya hassleriana
THA.LOC104800862 Tarenaya hassleriana
Thecc.01G148500 Theobroma cacao
Thecc.06G172300 Theobroma cacao
Thhalv10016698m.g Eutrema salsugineum
TPR.G29469 Trifolium pratense
TPR.G30391 Trifolium pratense
TWI59G1400 Tripterygium wilfordii
unitig_747.g21618 Utricularia gibba
vmacro09223 Vaccinium macrocarpon
vmacro12368 Vaccinium macrocarpon
VMungo1127G1865 Vigna mungo

User provided reference genes

Program Settings