Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p21620 Brassica napus
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis
Actinidia00204 Actinidia chinensis
Actinidia39035 Actinidia chinensis
Actinidia39037 Actinidia chinensis
Ah.14g086060 Amaranthus hybridus
AL2G15450 Arabidopsis lyrata
Aqoxy6G00209 Aquilegia oxysepala
Aqoxy7G01614 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea
AT1G61000 Arabidopsis thaliana
ATR0177G064 Amborella trichopoda
Atru.chr13.2649 Acer truncatum
Atru.chr4.610 Acer truncatum
Atru.chr8.1488 Acer truncatum
AUR62014224 Chenopodium quinoa
AUR62041118 Chenopodium quinoa
BcaC02g10598 Brassica carinata
BolC3t14948H Brassica oleracea
BolC4t24246H Brassica oleracea
BraA03t11397Z Brassica rapa
C03p25600 Brassica napus
C04p25630 Brassica napus
C05p50920 Brassica napus
C05p50930 Brassica napus
CAN.G1330.18 Capsicum annuum
CAN.G1882.2 Capsicum annuum
CAN.G1882.3 Capsicum annuum
CANSAT54G1257 Cannabis sativa
CARHR052070 Cardamine hirsuta
Carub.0002s0419 Capsella rubella
Carub.0002s0420 Capsella rubella
Ca_17808_v3 Cicer arietinum L.
Cc02_g22580 Coffea canephora
CDE08G0494 Ceratophyllum demersum
Cfa005513 Carpinus fangiana
Ciclev10015244m.g Citrus clementina
CiPaw.05G045000 Carya illinoinensis
ClCG03G000010 Citrullus lanatus
COL.COLO4_05853 Corchorus olitorius
COL.COLO4_10577 Corchorus olitorius
COL.COLO4_13071 Corchorus olitorius
COL.COLO4_15711 Corchorus olitorius
Cpa.g.sc8.264 Carica papaya
Cre01.g008450 Chlamydomonas reinhardtii
CsaV3_5G025650 Cucumis sativus L.
CSS0049092 Camellia sinensis var. sinensis
DCAR_006706 Daucus carota
Dinv24291 Davidia involucrata
Duzib177G0829 Durio zibethinus
ECA234G1828 Erigeron canadensis
EL10Ac2g02703 Beta vulgaris
Eucgr.G00575 Eucalyptus grandis
Eucgr.L03482 Eucalyptus grandis
FAN02G2941 Fragaria x ananassa
FAN03G1134 Fragaria x ananassa
FAN03G2280 Fragaria x ananassa
FAN05G4088 Fragaria x ananassa
FAN06G4932 Fragaria x ananassa
FAN10G1533 Fragaria x ananassa
FAN14G0315 Fragaria x ananassa
FvH4_6g25020 Fragaria vesca
FvH4_7g06682 Fragaria vesca
Glyma.05G169000 Glycine max
Gohir.A06G184800 Gossypium hirsutum
Gohir.A07G227000 Gossypium hirsutum
Gohir.D06G191600 Gossypium hirsutum
Gohir.D07G234200 Gossypium hirsutum
Gorai.001G269700 Gossypium raimondii
Gorai.010G224800 Gossypium raimondii
GSVIVG01022895001 Vitis vinifera
GSVIVG01035964001 Vitis vinifera
HanXRQChr10g0290511 Helianthus annuus
Haze_01703 Corylus avellana
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla
HPP92_000323 Vanilla planifolia
Hund15499 Selenicereus undatus
Hund15500 Selenicereus undatus
Lalb_Chr12g0204461 Lupinus albus
Lj4g0018170 Lotus japonicus
Lj5A252T47 Lonicera japonica
Lsat_1_v5_gn_5_105520 Lactuca sativa
Lsat_1_v5_gn_8_80961 Lactuca sativa
Manes.10G066500 Manihot esculenta
Mapoly0004s0096 Marchantia polymorpha
MBI17_g42496_MAGBIO Magnolia biondii
MCO07G624 Micromonas commoda
MD08G1232500 Malus domestica
MD08G1233000 Malus domestica
MD15G1425300 Malus domestica
Medtr4g049650 Medicago truncatula
Medtr8g088800 Medicago truncatula
Medtr8g088840 Medicago truncatula
MELO3C002916.2 Cucumis melo
MELO3C032876.2 Cucumis melo
Migut.B00830 Erythranthe guttata
MSTRG.16518 Avicennia marina
Nitab4.5_0000753g0130 Nicotiana tabacum
Nitab4.5_0003652g0050 Nicotiana tabacum
Nn1g08777 Nelumbo nucifera
Oeu027800.1 Olea europaea
Oeu033122.2 Olea europaea
Os03g0577100 Oryza sativa ssp. japonica
Os08g0163100 Oryza sativa ssp. japonica
Peaxi162Scf00152g01427 Petunia axillaris
Peaxi162Scf00152g01529 Petunia axillaris
PGR042G1236 Punica granatum
PGSC0003DMG400010002 Solanum tuberosum
Phvul.002G249700 Phaseolus vulgaris
Potri.007G116200 Populus trichocarpa
Potri.017G043000 Populus trichocarpa
Pp3c12_6220 Physcomitrium patens
PRCOL_00002550 Prasinoderma coloniale
Prupe.1G570900 Prunus persica
Psat7g062000 Pisum sativum
PSO210G1504 Papaver somniferum
PSO210G6794 Papaver somniferum
PSO210G7371 Papaver somniferum
QL02p098920 Quercus lobata
RcHm_v2.0_Chr1g0336301 Rosa chinensis
RcHm_v2.0_Chr7g0222021 Rosa chinensis
Rhsim09G0016100 Rhododendron simsii
Rhsim09G0048500 Rhododendron simsii
Rhsim09G0048700 Rhododendron simsii
Rhsim09G0048900 Rhododendron simsii
Rhsim09G0049000 Rhododendron simsii
Rhsim11G0128800 Rhododendron simsii
RhsimUnG0234900 Rhododendron simsii
Sabra07G0094500 Salix brachista
Sabra17G0029200 Salix brachista
Sc11g0004500 Simmondsia chinensis
Sed0013794 Sechium edule
SEGI_32079 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31325 Striga asiatica
SHI16664 Sapria himalayana
Solyc10g019040.2 Solanum lycopersicum
Sopen10g008970 Solanum pennellii
Sp2g03510 Schrenkiella parvula
TAR628G0514 Trochodendron aralioides
THA.LOC104809617 Tarenaya hassleriana
Thecc.05G227600 Theobroma cacao
Thhalv10023463m.g Eutrema salsugineum
TPR.G18400 Trifolium pratense
TPR.G23101 Trifolium pratense
TPR.G28353 Trifolium pratense
TPR.G31804 Trifolium pratense
TPR.G37878 Trifolium pratense
TPR.G37996 Trifolium pratense
TPR.G38758 Trifolium pratense
TPR.G40486 Trifolium pratense
TPR.G7268 Trifolium pratense
TWI59G0103 Tripterygium wilfordii
unitig_8.g2954 Utricularia gibba
vmacro01757 Vaccinium macrocarpon
VMungo0251G0767 Vigna mungo
VMungo0251G0798 Vigna mungo
Zm00001eb064460 Zea mays

User provided reference genes

Program Settings