Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p40080 Brassica napus
Aa31LG9G260 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1849 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.381 Anthoceros agrestis
Actinidia22207 Actinidia chinensis
Actinidia27285 Actinidia chinensis
Ah.12g053230 Amaranthus hybridus
AL1G39060 Arabidopsis lyrata
AL7G47302 Arabidopsis lyrata
Aqoxy3G00526 Aquilegia oxysepala
Aqoxy5G04330 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0LH6ZS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DJD4V2 Arachis hypogaea
AT1G26665 Arabidopsis thaliana
AT5G41910 Arabidopsis thaliana
ATR0620G086 Amborella trichopoda
Atru.chr3.1913 Acer truncatum
Atru.chr9.1879 Acer truncatum
AUR62007057 Chenopodium quinoa
AUR62019920 Chenopodium quinoa
BcaB03g14082 Brassica carinata
BcaB05g21931 Brassica carinata
BcaC05g26400 Brassica carinata
BcaC06g35131 Brassica carinata
BraA09t39504Z Brassica rapa
C05p24330 Brassica napus
CAN.G1631.10 Capsicum annuum
CAN.G6.3 Capsicum annuum
CANSAT56G2042 Cannabis sativa
CARHR025300 Cardamine hirsuta
CARHR212640 Cardamine hirsuta
Carub.0001s2436 Capsella rubella
Ca_02991_v3 Cicer arietinum L.
Ca_17957_v3 Cicer arietinum L.
Cc08_g16770 Coffea canephora
CDE07G1557 Ceratophyllum demersum
Cfa006748 Carpinus fangiana
Cfa007058 Carpinus fangiana
Cfa011920 Carpinus fangiana
Ciclev10022441m.g Citrus clementina
CiPaw.11G112000 Carya illinoinensis
CiPaw.12G077100 Carya illinoinensis
ClCG10G000810 Citrullus lanatus
COL.COLO4_10799 Corchorus olitorius
Cpa.g.sc27.182 Carica papaya
Cre12.g556450 Chlamydomonas reinhardtii
CsaV3_3G000870 Cucumis sativus L.
CSS0029651 Camellia sinensis var. sinensis
CSS0036474 Camellia sinensis var. sinensis
CSS0049671 Camellia sinensis var. sinensis
DCAR_006547 Daucus carota
DCAR_011870 Daucus carota
Dinv38179 Davidia involucrata
Duzib068G1021 Durio zibethinus
Duzib205G1187 Durio zibethinus
ECA246G3328 Erigeron canadensis
EL10Ac5g12425 Beta vulgaris
Eucgr.C04229 Eucalyptus grandis
FAN07G0034 Fragaria x ananassa
FAN17G2704 Fragaria x ananassa
FAN22G0758 Fragaria x ananassa
FvH4_4g11450 Fragaria vesca
FvH4_5g19692 Fragaria vesca
Glyma.08G296500 Glycine max
Glyma.18G125700 Glycine max
Gohir.A12G240200 Gossypium hirsutum
Gohir.D12G241500 Gossypium hirsutum
Gorai.008G258800 Gossypium raimondii
GSVIVG01019654001 Vitis vinifera
HanXRQChr17g0534221 Helianthus annuus
Haze_04010 Corylus avellana
Haze_09177 Corylus avellana
Hma1.2p1_0456F.1_g156630 Hydrangea macrophylla
HPP92_025871 Vanilla planifolia
Hund11348 Selenicereus undatus
Lalb_Chr12g0205381 Lupinus albus
Lalb_Chr13g0294931 Lupinus albus
Lj4g0018067 Lotus japonicus
Lj4g0019040 Lotus japonicus
Lj8A200T57 Lonicera japonica
Lsat_1_v5_gn_3_14420 Lactuca sativa
Manes.09G101000 Manihot esculenta
Mapoly0151s0039 Marchantia polymorpha
MBI04_g25309_MAGBIO Magnolia biondii
MD06G1119500 Malus domestica
MD14G1136300 Malus domestica
Medtr1g041545 Medicago truncatula
Medtr8g085570 Medicago truncatula
MELO3C013773.2 Cucumis melo
Migut.E00628 Erythranthe guttata
MSTRG.12201 Avicennia marina
MSTRG.24865 Avicennia marina
Nitab4.5_0001367g0040 Nicotiana tabacum
Nitab4.5_0002724g0080 Nicotiana tabacum
Nitab4.5_0012632g0010 Nicotiana tabacum
Nitab4.5_0017193g0030 Nicotiana tabacum
Nn3g18812 Nelumbo nucifera
Oeu022035.1 Olea europaea
Os09g0528300 Oryza sativa ssp. japonica
Peaxi162Scf00640g00032 Petunia axillaris
Peaxi162Scf01444g00013 Petunia axillaris
PGR031G2275 Punica granatum
PGSC0003DMG400008601 Solanum tuberosum
PGSC0003DMG400017120 Solanum tuberosum
PGSC0003DMG400029951 Solanum tuberosum
PGSC0003DMG400039131 Solanum tuberosum
PGSC0003DMG400040735 Solanum tuberosum
PGSC0003DMG400043501 Solanum tuberosum
Phvul.003G069600 Phaseolus vulgaris
Potri.001G083801 Populus trichocarpa
Potri.003G146900 Populus trichocarpa
Pp3c11_16910 Physcomitrium patens
Prupe.2G307200 Prunus persica
Prupe.5G130000 Prunus persica
Psat7g072880 Pisum sativum
Psat7g073160 Pisum sativum
Psat7g073280 Pisum sativum
Psat7g074000 Pisum sativum
PSO017G1681 Papaver somniferum
PSO478G2085 Papaver somniferum
QL02p027997 Quercus lobata
QL12p036922 Quercus lobata
RcHm_v2.0_Chr1g0332661 Rosa chinensis
RcHm_v2.0_Chr2g0098501 Rosa chinensis
RcHm_v2.0_Chr5g0055281 Rosa chinensis
RcHm_v2.0_Chr6g0273561 Rosa chinensis
RcHm_v2.0_Chr7g0187021 Rosa chinensis
Rhsim07G0078000 Rhododendron simsii
Sabra01G0060700 Salix brachista
Sabra03G0106900 Salix brachista
SalBow6G4763 Salvia bowleyana
Sc01g0010720 Simmondsia chinensis
Sed0024458 Sechium edule
SEGI_32557 Sequoiadendron giganteum
SGA_v2.0_scaffold104G30259 Striga asiatica
SGA_v2.0_scaffold14G07039 Striga asiatica
SGA_v2.0_scaffold36G14274 Striga asiatica
SMO301G0053 Selaginella moellendorffii
Solyc08g065160.3 Solanum lycopersicum
Sopen08g018760 Solanum pennellii
Sp1g22150 Schrenkiella parvula
TAR374G0495 Trochodendron aralioides
TAR375G0036 Trochodendron aralioides
TAR375G0490 Trochodendron aralioides
TAR629G2664 Trochodendron aralioides
THA.LOC104809303 Tarenaya hassleriana
Thecc.03G220900 Theobroma cacao
Thhalv10008848m.g Eutrema salsugineum
TPR.G11962 Trifolium pratense
TPR.G15828 Trifolium pratense
TWI36G0523 Tripterygium wilfordii
TWI56G0194 Tripterygium wilfordii
unitig_21.g20890 Utricularia gibba
unitig_744.g24303 Utricularia gibba
vmacro11499 Vaccinium macrocarpon
vmacro13851 Vaccinium macrocarpon
VMungo0251G0643 Vigna mungo
Zm00001eb103320 Zea mays
Zm00001eb319380 Zea mays

User provided reference genes

Program Settings