Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p08740 Brassica napus
Aa31LG5G22320 Aethionema arabicum
Actinidia14388 Actinidia chinensis
Actinidia40043 Actinidia chinensis
Ah.15g092180 Amaranthus hybridus
AL4G33450 Arabidopsis lyrata
AL6G12390 Arabidopsis lyrata
Aqoxy4G03228 Aquilegia oxysepala
AT2G37100 Arabidopsis thaliana
AT5G03110 Arabidopsis thaliana
ATR0759G041 Amborella trichopoda
Atru.chr8.1895 Acer truncatum
AUR62040029 Chenopodium quinoa
AUR62042302 Chenopodium quinoa
AUR62044753 Chenopodium quinoa
BcaB02g09303 Brassica carinata
BcaB05g21851 Brassica carinata
BcaC02g11837 Brassica carinata
BcaC03g13031 Brassica carinata
BolC2t06077H Brassica oleracea
BolC4t22678H Brassica oleracea
BolC4t28067H Brassica oleracea
BraA02t04744Z Brassica rapa
BraA05t19842Z Brassica rapa
C02p00790 Brassica napus
C04p10830 Brassica napus
CANSAT80G2505 Cannabis sativa
CARHR131610 Cardamine hirsuta
CARHR210240 Cardamine hirsuta
Carub.0004s1899 Capsella rubella
Carub.0006s0191 Capsella rubella
Ca_08832_v3 Cicer arietinum L.
Cc06_g03680 Coffea canephora
Cfa017521 Carpinus fangiana
CiPaw.09G179000 Carya illinoinensis
CiPaw.10G136800 Carya illinoinensis
ClCG04G008860 Citrullus lanatus
ClCG10G020450 Citrullus lanatus
COL.COLO4_27061 Corchorus olitorius
Cpa.g.sc174.12 Carica papaya
CsaV3_3G035670 Cucumis sativus L.
CsaV3_6G039360 Cucumis sativus L.
CSS0015121 Camellia sinensis var. sinensis
CSS0026303 Camellia sinensis var. sinensis
CSS0037383 Camellia sinensis var. sinensis
DCAR_009279 Daucus carota
DCAR_009280 Daucus carota
DCAR_014968 Daucus carota
Dinv35728 Davidia involucrata
Dinv37265 Davidia involucrata
Duzib093G0117 Durio zibethinus
Duzib106G0876 Durio zibethinus
ECA233G0353 Erigeron canadensis
FAN02G0924 Fragaria x ananassa
FAN05G3415 Fragaria x ananassa
FAN09G3365 Fragaria x ananassa
FAN14G2800 Fragaria x ananassa
FvH4_6g15510 Fragaria vesca
Glyma.03G178700 Glycine max
Glyma.10G050500 Glycine max
Glyma.13G138000 Glycine max
Glyma.19G179400 Glycine max
Gohir.A04G075800 Gossypium hirsutum
Gohir.A09G151400 Gossypium hirsutum
Gohir.D04G114901 Gossypium hirsutum
Gohir.D09G147000 Gossypium hirsutum
Gorai.006G168200 Gossypium raimondii
Gorai.009G419500 Gossypium raimondii
GSVIVG01025644001 Vitis vinifera
HanXRQChr02g0051991 Helianthus annuus
Haze_20629 Corylus avellana
Hma1.2p1_0111F.1_g054000 Hydrangea macrophylla
Hma1.2p1_0350F.1_g132810 Hydrangea macrophylla
HPP92_001043 Vanilla planifolia
HPP92_025086 Vanilla planifolia
Lalb_Chr01g0018981 Lupinus albus
Lalb_Chr20g0112851 Lupinus albus
Lalb_Chr25g0289231 Lupinus albus
Lj1g0000961 Lotus japonicus
Lj5g0026303 Lotus japonicus
Lsat_1_v5_gn_1_54160 Lactuca sativa
Lsat_1_v5_gn_6_30120 Lactuca sativa
Manes.05G197001 Manihot esculenta
Manes.05G197300 Manihot esculenta
Manes.08G004109 Manihot esculenta
Manes.08G004114 Manihot esculenta
Manes.08G004117 Manihot esculenta
Manes.08G004120 Manihot esculenta
Manes.08G004126 Manihot esculenta
Manes.08G004127 Manihot esculenta
Manes.08G004131 Manihot esculenta
Manes.08G004906 Manihot esculenta
Manes.09G078863 Manihot esculenta
Manes.12G048251 Manihot esculenta
MD04G1102600 Malus domestica
MD12G1122400 Malus domestica
Medtr1g066750 Medicago truncatula
Medtr7g100830 Medicago truncatula
MELO3C009326.2 Cucumis melo
MELO3C014257.2 Cucumis melo
Migut.J00423 Erythranthe guttata
MSTRG.10304 Avicennia marina
MSTRG.19143 Avicennia marina
MSTRG.26719 Avicennia marina
Nitab4.5_0006156g0060 Nicotiana tabacum
Nn2g10698 Nelumbo nucifera
Nn2g13028 Nelumbo nucifera
Nn4g25115 Nelumbo nucifera
Nn4g25721 Nelumbo nucifera
Oeu029418.1 Olea europaea
Oeu038974.1 Olea europaea
Oeu059988.1 Olea europaea
Os05g0125100 Oryza sativa ssp. japonica
Peaxi162Scf00005g04016 Petunia axillaris
PGR004G1454 Punica granatum
PGSC0003DMG400001742 Solanum tuberosum
Phvul.001G175400 Phaseolus vulgaris
Phvul.007G164800 Phaseolus vulgaris
Potri.006G130500 Populus trichocarpa
Potri.016G086900 Populus trichocarpa
Prupe.6G240400 Prunus persica
Psat3g044200 Pisum sativum
Psat3g044240 Pisum sativum
Psat6g070200 Pisum sativum
PSO063G6372 Papaver somniferum
PSO339G0805 Papaver somniferum
PSO339G1230 Papaver somniferum
PSO384G2831 Papaver somniferum
QL07p045089 Quercus lobata
RcHm_v2.0_Chr3g0469011 Rosa chinensis
Rhsim04G0149000 Rhododendron simsii
RhsimUnG0115800 Rhododendron simsii
Sabra06G0102500 Salix brachista
Sabra16G0093100 Salix brachista
SalBow3G3210 Salvia bowleyana
Sc02g0001920 Simmondsia chinensis
Sc20g0005110 Simmondsia chinensis
Sed0006356 Sechium edule
Sed0011318 Sechium edule
Sed0022446 Sechium edule
SGA_v2.0_scaffold126G33909 Striga asiatica
SGA_v2.0_scaffold94G28675 Striga asiatica
SHI12538 Sapria himalayana
Solyc09g007470.2 Solanum lycopersicum
Sopen00g013370 Solanum pennellii
Sp4g19420 Schrenkiella parvula
Sp6g39600 Schrenkiella parvula
TAR623G0879 Trochodendron aralioides
THA.LOC104806496 Tarenaya hassleriana
THA.LOC104816329 Tarenaya hassleriana
THA.LOC104826978 Tarenaya hassleriana
Thecc.05G055800 Theobroma cacao
Thhalv10014228m.g Eutrema salsugineum
Thhalv10016942m.g Eutrema salsugineum
TPR.G36959 Trifolium pratense
TWI53G1356 Tripterygium wilfordii
TWI77G0862 Tripterygium wilfordii
unitig_26.g9218 Utricularia gibba
VMungo1383G2757 Vigna mungo
Zm00001eb265390 Zea mays

User provided reference genes

Program Settings