Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p08310 Brassica napus
A03p59280 Brassica napus
A07p01390 Brassica napus
A09p12330 Brassica napus
Aa31LG2G20690 Aethionema arabicum
Ah.14g086030 Amaranthus hybridus
AL3G48970 Arabidopsis lyrata
AL7G22400 Arabidopsis lyrata
Aqoxy7G02925 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BX0J8Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FSCD1Z Arachis hypogaea
AT2G19350 Arabidopsis thaliana
AT4G29850 Arabidopsis thaliana
ATR0580G349 Amborella trichopoda
Atru.chr7.991 Acer truncatum
AUR62027442 Chenopodium quinoa
AUR62031259 Chenopodium quinoa
BcaB03g16723 Brassica carinata
BcaB07g31613 Brassica carinata
BcaC04g22858 Brassica carinata
BcaC06g36566 Brassica carinata
BcaNung00496 Brassica carinata
BolC1t00923H Brassica oleracea
BolC7t40682H Brassica oleracea
BolC7t46198H Brassica oleracea
BolC9t54358H Brassica oleracea
BraA01t00779Z Brassica rapa
BraA03t14985Z Brassica rapa
BraA07t27934Z Brassica rapa
BraA09t36877Z Brassica rapa
C01p09350 Brassica napus
C07p02850 Brassica napus
C07p57290 Brassica napus
C09p14540 Brassica napus
CAN.G1495.9 Capsicum annuum
CANSAT01G2105 Cannabis sativa
CARHR109800 Cardamine hirsuta
CARHR237750 Cardamine hirsuta
Carub.0003s3357 Capsella rubella
Carub.0004s1478 Capsella rubella
Ca_02141_v3 Cicer arietinum L.
Ca_21269_v3 Cicer arietinum L.
CBR_g46719 Chara braunii
Cc06_g12980 Coffea canephora
CDE02G2186 Ceratophyllum demersum
CDE04G0988 Ceratophyllum demersum
Cfa013479 Carpinus fangiana
Ciclev10009996m.g Citrus clementina
CiPaw.07G199800 Carya illinoinensis
CiPaw.08G030800 Carya illinoinensis
ClCG06G013730 Citrullus lanatus
COL.COLO4_23446 Corchorus olitorius
Cpa.g.sc115.54 Carica papaya
CsaV3_1G031980 Cucumis sativus L.
CSS0026677 Camellia sinensis var. sinensis
DCAR_014680 Daucus carota
DCAR_017994 Daucus carota
Duzib168G2374 Durio zibethinus
Duzib170G0172 Durio zibethinus
EL10Ac8g19281 Beta vulgaris
Eucgr.F03858 Eucalyptus grandis
Eucgr.F03859 Eucalyptus grandis
FAN07G1794 Fragaria x ananassa
FAN12G3358 Fragaria x ananassa
FAN17G0770 Fragaria x ananassa
FAN22G1515 Fragaria x ananassa
FvH4_4g06710 Fragaria vesca
Glyma.09G062200 Glycine max
Glyma.13G102400 Glycine max
Glyma.15G168600 Glycine max
Glyma.17G056600 Glycine max
Gohir.A05G345854 Gossypium hirsutum
Gohir.A08G080700 Gossypium hirsutum
Gohir.D04G085200 Gossypium hirsutum
Gohir.D08G090800 Gossypium hirsutum
Gorai.004G096100 Gossypium raimondii
Gorai.012G095200 Gossypium raimondii
GSVIVG01029250001 Vitis vinifera
HanXRQChr05g0142171 Helianthus annuus
Haze_22059 Corylus avellana
Haze_24699 Corylus avellana
Hma1.2p1_0571F.1_g180790 Hydrangea macrophylla
Hma1.2p1_1219F.1_g267870 Hydrangea macrophylla
HPP92_010317 Vanilla planifolia
HPP92_021983 Vanilla planifolia
Hund06695 Selenicereus undatus
Lalb_Chr11g0074651 Lupinus albus
Lj2g0010276 Lotus japonicus
Lj2g0014857 Lotus japonicus
Lj4g0004777 Lotus japonicus
Lj6g0012515 Lotus japonicus
Lsat_1_v5_gn_8_68841 Lactuca sativa
Manes.04G036000 Manihot esculenta
Manes.11G129400 Manihot esculenta
Mapoly0038s0099 Marchantia polymorpha
MD13G1237400 Malus domestica
MD16G1242800 Malus domestica
Medtr2g038550 Medicago truncatula
Medtr4g126790 Medicago truncatula
MELO3C017417.2 Cucumis melo
Migut.J01504 Erythranthe guttata
MSTRG.10746 Avicennia marina
MSTRG.19721 Avicennia marina
MSTRG.6242 Avicennia marina
Nitab4.5_0000957g0040 Nicotiana tabacum
Nitab4.5_0005445g0030 Nicotiana tabacum
Nitab4.5_0010128g0020 Nicotiana tabacum
Nn8g40538 Nelumbo nucifera
Oeu025208.1 Olea europaea
Oeu025695.1 Olea europaea
Oeu032540.1 Olea europaea
Os02g0176400 Oryza sativa ssp. japonica
Peaxi162Scf01558g00013 Petunia axillaris
PGR142G0686 Punica granatum
PGSC0003DMG400018747 Solanum tuberosum
Phvul.003G157700 Phaseolus vulgaris
Phvul.009G233600 Phaseolus vulgaris
Potri.006G072000 Populus trichocarpa
Potri.018G133500 Populus trichocarpa
Pp3c12_21250 Physcomitrium patens
Prupe.1G069900 Prunus persica
Psat1g142560 Pisum sativum
Psat4g013880 Pisum sativum
PSO063G1528 Papaver somniferum
PSO170G5845 Papaver somniferum
QL11p005289 Quercus lobata
RcHm_v2.0_Chr2g0106271 Rosa chinensis
RcHm_v2.0_Chr3g0494811 Rosa chinensis
RcHm_v2.0_Chr4g0391941 Rosa chinensis
RcHm_v2.0_Chr4g0398651 Rosa chinensis
RcHm_v2.0_Chr6g0255091 Rosa chinensis
Rhsim01G0068600 Rhododendron simsii
Sabra18G0113200 Salix brachista
SalBow1G0556 Salvia bowleyana
Sc14g0003140 Simmondsia chinensis
Sed0005515 Sechium edule
Sed0012081 Sechium edule
SGA_v2.0_scaffold17G07943 Striga asiatica
SGA_v2.0_scaffold66G22434 Striga asiatica
SGA_v2.0_scaffold69G23243 Striga asiatica
SMO347G0074 Selaginella moellendorffii
SMO348G0029 Selaginella moellendorffii
Sopen07g003040 Solanum pennellii
Sp3g32720 Schrenkiella parvula
Sp7g27660 Schrenkiella parvula
TAR383G0891 Trochodendron aralioides
THA.LOC104803963 Tarenaya hassleriana
THA.LOC104813499 Tarenaya hassleriana
THA.LOC104817767 Tarenaya hassleriana
Thecc.09G188500 Theobroma cacao
Thhalv10022925m.g Eutrema salsugineum
Thhalv10026650m.g Eutrema salsugineum
TPR.G31650 Trifolium pratense
TPR.G32576 Trifolium pratense
TWI34G1740 Tripterygium wilfordii
unitig_0.g577 Utricularia gibba
unitig_60.g25493 Utricularia gibba
vmacro20569 Vaccinium macrocarpon
VMungo1309G0306 Vigna mungo
Zm00001eb206870 Zea mays
Zm00001eb389280 Zea mays

User provided reference genes

Program Settings