Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p39020 Brassica napus
A06p37040 Brassica napus
A09p05650 Brassica napus
Aa31LG1G17020 Aethionema arabicum
Aa31LG5G16190 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.963 Anthoceros agrestis
Actinidia35512 Actinidia chinensis
Ah.06g196140 Amaranthus hybridus
Ah.16g100620 Amaranthus hybridus
AL3G16550 Arabidopsis lyrata
AL6G38670 Arabidopsis lyrata
Aqoxy2G02663 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3R4C35 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.44SN5D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IGN13F Arachis hypogaea
AT3G05810 Arabidopsis thaliana
ATR0693G181 Amborella trichopoda
Atru.chr1.2932 Acer truncatum
AUR62000416 Chenopodium quinoa
AUR62006764 Chenopodium quinoa
AUR62033672 Chenopodium quinoa
AUR62036369 Chenopodium quinoa
BcaB04g19711 Brassica carinata
BcaC03g17832 Brassica carinata
BcaC04g23637 Brassica carinata
BcaNung03672 Brassica carinata
BcaNung03915 Brassica carinata
BcaNung06220 Brassica carinata
BolC2t11922H Brassica oleracea
BolC7t44679H Brassica oleracea
BolC9t53546H Brassica oleracea
BraA06t26628Z Brassica rapa
BraA09t36207Z Brassica rapa
C02p58610 Brassica napus
C09p06260 Brassica napus
CAN.G1076.31 Capsicum annuum
CANSAT54G2827 Cannabis sativa
CANSAT56G4147 Cannabis sativa
CARHR080260 Cardamine hirsuta
CARHR186760 Cardamine hirsuta
Carub.0003s0517 Capsella rubella
Carub.0006s2445 Capsella rubella
Ca_10181_v3 Cicer arietinum L.
Cc02_g35220 Coffea canephora
CDE02G2719 Ceratophyllum demersum
CDE09G1304 Ceratophyllum demersum
Cfa006723 Carpinus fangiana
Ciclev10002908m.g Citrus clementina
CiPaw.07G030800 Carya illinoinensis
CiPaw.08G154600 Carya illinoinensis
ClCG03G017770 Citrullus lanatus
COL.COLO4_05537 Corchorus olitorius
Cpa.g.sc48.175 Carica papaya
CsaV3_1G037920 Cucumis sativus L.
CSS0034232 Camellia sinensis var. sinensis
DCAR_002036 Daucus carota
DCAR_025290 Daucus carota
Dinv30905 Davidia involucrata
Duzib106G0025 Durio zibethinus
Duzib128G0232 Durio zibethinus
ECA238G3981 Erigeron canadensis
EL10Ac4g09488 Beta vulgaris
Eucgr.A00650 Eucalyptus grandis
Eucgr.H03248 Eucalyptus grandis
Eucgr.H03299 Eucalyptus grandis
FAN02G2550 Fragaria x ananassa
FAN05G2322 Fragaria x ananassa
FAN09G3660 Fragaria x ananassa
FAN14G0179 Fragaria x ananassa
FAN26G0538 Fragaria x ananassa
FAN28G0201 Fragaria x ananassa
FAN28G2801 Fragaria x ananassa
FvH4_6g32060 Fragaria vesca
Glyma.10G146200 Glycine max
Glyma.20G096000 Glycine max
Gohir.A08G205100 Gossypium hirsutum
Gohir.D08G222200 Gossypium hirsutum
Gorai.004G236000 Gossypium raimondii
GSVIVG01031257001 Vitis vinifera
HanXRQChr14g0445721 Helianthus annuus
HanXRQChr15g0471581 Helianthus annuus
Haze_04037 Corylus avellana
Hma1.2p1_0008F-1.1_g005470 Hydrangea macrophylla
Hma1.2p1_0052F.1_g030690 Hydrangea macrophylla
HPP92_002665 Vanilla planifolia
HPP92_002708 Vanilla planifolia
HPP92_027934 Vanilla planifolia
Hund07308 Selenicereus undatus
Hund21865 Selenicereus undatus
Lalb_Chr02g0147721 Lupinus albus
Lj6g0017458 Lotus japonicus
Lju926A3T37 Lonicera japonica
Lsat_1_v5_gn_2_67201 Lactuca sativa
Manes.08G110300 Manihot esculenta
Manes.09G177800 Manihot esculenta
Mapoly0164s0021 Marchantia polymorpha
MBI18_g35544_MAGBIO Magnolia biondii
MD07G1055000 Malus domestica
MD10G1090000 Malus domestica
MD15G1427600 Malus domestica
Medtr2g023920 Medicago truncatula
MELO3C015252.2 Cucumis melo
Migut.N00943 Erythranthe guttata
MSTRG.5145 Avicennia marina
Nitab4.5_0001255g0050 Nicotiana tabacum
Nitab4.5_0001338g0040 Nicotiana tabacum
Nitab4.5_0010074g0010 Nicotiana tabacum
Nn3g21765 Nelumbo nucifera
Nn4g25533 Nelumbo nucifera
Oeu000058.1 Olea europaea
Os01g0299400 Oryza sativa ssp. japonica
Os10g0150200 Oryza sativa ssp. japonica
Peaxi162Scf00357g00829 Petunia axillaris
PGR031G2302 Punica granatum
PGSC0003DMG400002761 Solanum tuberosum
Phvul.007G202300 Phaseolus vulgaris
Potri.005G011800 Populus trichocarpa
Potri.013G007600 Populus trichocarpa
Pp3c6_8090 Physcomitrium patens
Prupe.2G047800 Prunus persica
Prupe.3G062500 Prunus persica
Psat1g179040 Pisum sativum
PSO339G4842 Papaver somniferum
PSO513G0108 Papaver somniferum
PSO541G1615 Papaver somniferum
PSO675G4687 Papaver somniferum
QL03p015399 Quercus lobata
RcHm_v2.0_Chr2g0139741 Rosa chinensis
Rhsim05G0127900 Rhododendron simsii
Rhsim11G0097400 Rhododendron simsii
Sabra05G0008600 Salix brachista
Sabra05G0020100 Salix brachista
Sabra13G0006500 Salix brachista
SalBow5G0245 Salvia bowleyana
Sc16g0009110 Simmondsia chinensis
Sc18g0006160 Simmondsia chinensis
Sed0027904 Sechium edule
SEGI_31285 Sequoiadendron giganteum
SGA_v2.0_scaffold37G14596 Striga asiatica
SGA_v2.0_scaffold5G02899 Striga asiatica
SHI42436 Sapria himalayana
SMO116G0179 Selaginella moellendorffii
Sopen01g044200 Solanum pennellii
Sp2g21200 Schrenkiella parvula
Sp3g04670 Schrenkiella parvula
TAR362G0763 Trochodendron aralioides
THA.LOC104802774 Tarenaya hassleriana
THA.LOC104821881 Tarenaya hassleriana
Thecc.05G324600 Theobroma cacao
Thhalv10021798m.g Eutrema salsugineum
Thhalv10026672m.g Eutrema salsugineum
TPR.G29395 Trifolium pratense
TPR.G34849 Trifolium pratense
TWI34G1281 Tripterygium wilfordii
TWI36G1558 Tripterygium wilfordii
TWI63G0379 Tripterygium wilfordii
unitig_37.g12917 Utricularia gibba
vmacro01577 Vaccinium macrocarpon
VMungo0720G0966 Vigna mungo
Zm00001eb130040 Zea mays
Zm00001eb340410 Zea mays

User provided reference genes

Program Settings