Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p10850 Brassica napus
A09p35240 Brassica napus
Aa31LG6G12370 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis
Actinidia22430 Actinidia chinensis
Actinidia33704 Actinidia chinensis
Ah.03g147620 Amaranthus hybridus
AL1G45380 Arabidopsis lyrata
Aqoxy1G01395 Aquilegia oxysepala
Aqoxy1G01396 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea
AT1G30970 Arabidopsis thaliana
ATR0568G227 Amborella trichopoda
Atru.chr10.352 Acer truncatum
Atru.chr10.360 Acer truncatum
Atru.chr8.662 Acer truncatum
AUR62003535 Chenopodium quinoa
AUR62017849 Chenopodium quinoa
BcaB04g18194 Brassica carinata
BcaB07g32757 Brassica carinata
BcaC05g27130 Brassica carinata
BcaC07g37789 Brassica carinata
BolC5t31752H Brassica oleracea
BolC8t48181H Brassica oleracea
BraA08t33081Z Brassica rapa
BraA09t39051Z Brassica rapa
C05p30150 Brassica napus
CAN.G270.3 Capsicum annuum
CAN.G809.71 Capsicum annuum
CAN.G958.2 Capsicum annuum
CANSAT35G1493 Cannabis sativa
CARHR030510 Cardamine hirsuta
Carub.0001s2938 Capsella rubella
Ca_17239_v3 Cicer arietinum L.
CBR_g1074 Chara braunii
Cc09_g05240 Coffea canephora
Cfa001128 Carpinus fangiana
Cfa025961 Carpinus fangiana
Ciclev10015448m.g Citrus clementina
CiPaw.09G137500 Carya illinoinensis
CiPaw.09G137600 Carya illinoinensis
CiPaw.10G104800 Carya illinoinensis
ClCG01G025530 Citrullus lanatus
COL.COLO4_18029 Corchorus olitorius
Cpa.g.sc30.114 Carica papaya
Cre06.g305200 Chlamydomonas reinhardtii
CsaV3_6G052770 Cucumis sativus L.
CSS0030674 Camellia sinensis var. sinensis
CSS0046356 Camellia sinensis var. sinensis
DCAR_003760 Daucus carota
Dinv01000 Davidia involucrata
Dinv05655 Davidia involucrata
Dinv23013 Davidia involucrata
Dinv23014 Davidia involucrata
Dinv31191 Davidia involucrata
Duzib132G0752 Durio zibethinus
Duzib248G0466 Durio zibethinus
ECA232G3357 Erigeron canadensis
EL10Ac6g15345 Beta vulgaris
Eucgr.E04313 Eucalyptus grandis
FAN11G2748 Fragaria x ananassa
FAN16G2829 Fragaria x ananassa
FAN21G3105 Fragaria x ananassa
FAN25G3492 Fragaria x ananassa
FvH4_3g12940 Fragaria vesca
Glyma.05G241800 Glycine max
Glyma.08G049300 Glycine max
Gohir.A12G049500 Gossypium hirsutum
Gohir.D12G047900 Gossypium hirsutum
Gorai.008G050900 Gossypium raimondii
GSVIVG01012145001 Vitis vinifera
GSVIVG01015874001 Vitis vinifera
GSVIVG01015880001 Vitis vinifera
HanXRQChr09g0257831 Helianthus annuus
Haze_05262 Corylus avellana
Haze_05275 Corylus avellana
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla
HPP92_006155 Vanilla planifolia
HPP92_024334 Vanilla planifolia
Hund04373 Selenicereus undatus
Lalb_Chr05g0222011 Lupinus albus
Lalb_Chr09g0330711 Lupinus albus
Lalb_Chr10g0095541 Lupinus albus
Lj1A1149G74 Lonicera japonica
Lj1g0003853 Lotus japonicus
Lj4g0008002 Lotus japonicus
Lsat_1_v5_gn_8_106840 Lactuca sativa
Manes.03G075400 Manihot esculenta
Mapoly0070s0095 Marchantia polymorpha
MBI18_g00544_MAGBIO Magnolia biondii
MCO08G042 Micromonas commoda
MD05G1247000 Malus domestica
MD10G1227600 Malus domestica
Medtr8g106220 Medicago truncatula
MELO3C007033.2 Cucumis melo
Migut.M02008 Erythranthe guttata
MSTRG.16369 Avicennia marina
Nitab4.5_0004903g0050 Nicotiana tabacum
Nitab4.5_0006794g0040 Nicotiana tabacum
Nitab4.5_0010401g0010 Nicotiana tabacum
Nn7g38330 Nelumbo nucifera
Oeu018409.2 Olea europaea
Oeu056059.4 Olea europaea
Os09g0560900 Oryza sativa ssp. japonica
Peaxi162Scf00048g01413 Petunia axillaris
Peaxi162Scf00198g01525 Petunia axillaris
PGR042G3514 Punica granatum
PGSC0003DMG401017733 Solanum tuberosum
Phvul.002G325100 Phaseolus vulgaris
Potri.001G160700 Populus trichocarpa
Potri.003G074200 Populus trichocarpa
Pp3c19_17160 Physcomitrium patens
Pp3c22_1400 Physcomitrium patens
Prupe.4G117400 Prunus persica
Psat6g089360 Pisum sativum
Psat7g005440 Pisum sativum
Psat7g229080 Pisum sativum
PSO541G2602 Papaver somniferum
PSO675G3183 Papaver somniferum
QL11p012272 Quercus lobata
RcHm_v2.0_Chr5g0021051 Rosa chinensis
Rhsim13G0133700 Rhododendron simsii
Rhsim13G0133800 Rhododendron simsii
RhsimUnG0176700 Rhododendron simsii
RhsimUnG0176800 Rhododendron simsii
Sabra01G0131600 Salix brachista
Sabra03G0044900 Salix brachista
SalBow8G1652 Salvia bowleyana
Sc16g0004480 Simmondsia chinensis
Sed0004537 Sechium edule
SEGI_00495 Sequoiadendron giganteum
SEGI_03989 Sequoiadendron giganteum
SEGI_09071 Sequoiadendron giganteum
SGA_v2.0_scaffold175G39329 Striga asiatica
SGA_v2.0_scaffold298G47706 Striga asiatica
SMO239G0124 Selaginella moellendorffii
Solyc02g032120.3 Solanum lycopersicum
Solyc02g081620.3 Solanum lycopersicum
Solyc12g077430.1 Solanum lycopersicum
Solyc12g077440.2 Solanum lycopersicum
Sopen02g010370 Solanum pennellii
Sopen02g026240 Solanum pennellii
Sopen12g027920 Solanum pennellii
Sopen12g027930 Solanum pennellii
Sp1g26830 Schrenkiella parvula
TAR624G0396 Trochodendron aralioides
TAR629G1033 Trochodendron aralioides
THA.LOC104798567 Tarenaya hassleriana
Thecc.02G004200 Theobroma cacao
Thhalv10008022m.g Eutrema salsugineum
TPR.G12851 Trifolium pratense
TWI15G0381 Tripterygium wilfordii
TWI15G0530 Tripterygium wilfordii
TWI15G1036 Tripterygium wilfordii
TWI32G0924 Tripterygium wilfordii
TWI34G0639 Tripterygium wilfordii
TWI63G0296 Tripterygium wilfordii
unitig_748.g7489 Utricularia gibba
vmacro03556 Vaccinium macrocarpon
VMungo0251G3730 Vigna mungo
Zm00001eb104750 Zea mays

User provided reference genes

Program Settings