Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05960 Brassica napus
A09p46640 Brassica napus
Aa31LG10G9470 Aethionema arabicum
Aa31LG5G22900 Aethionema arabicum
Actinidia05294 Actinidia chinensis
Ah.00g000610 Amaranthus hybridus
Ah.01g015860 Amaranthus hybridus
AL5G34580 Arabidopsis lyrata
Aqoxy2G02012 Aquilegia oxysepala
Aqoxy3G04288 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea
AT1G55710 Arabidopsis thaliana
AT3G53342 Arabidopsis thaliana
AT3G53630 Arabidopsis thaliana
AT4G18692 Arabidopsis thaliana
ATR0222G016 Amborella trichopoda
ATR0222G031 Amborella trichopoda
Atru.chr3.3828 Acer truncatum
Atru.chr7.899 Acer truncatum
Atru.chr8.1930 Acer truncatum
AUR62013875 Chenopodium quinoa
AUR62036719 Chenopodium quinoa
BcaB01g00258 Brassica carinata
BcaB02g08517 Brassica carinata
BcaC02g09143 Brassica carinata
BcaC07g39724 Brassica carinata
BcaC08g44641 Brassica carinata
BolC4t25460H Brassica oleracea
BolC6t37347H Brassica oleracea
BolC8t50499H Brassica oleracea
BraA09t40127Z Brassica rapa
C03p31080 Brassica napus
C06p21580 Brassica napus
C08p28960 Brassica napus
CAN.G688.9 Capsicum annuum
CAN.G97.23 Capsicum annuum
CARHR163560 Cardamine hirsuta
Carub.0005s2021 Capsella rubella
Ca_08790_v3 Cicer arietinum L.
CBR_g20121 Chara braunii
Cc06_g03000 Coffea canephora
CDE04G3062 Ceratophyllum demersum
CDE07G1713 Ceratophyllum demersum
Ciclev10013673m.g Citrus clementina
Ciclev10029396m.g Citrus clementina
CiPaw.05G236000 Carya illinoinensis
CiPaw.09G188700 Carya illinoinensis
CiPaw.10G142900 Carya illinoinensis
ClCG10G020910 Citrullus lanatus
COL.COLO4_14858 Corchorus olitorius
COL.COLO4_24433 Corchorus olitorius
CsaV3_3G035100 Cucumis sativus L.
CSS0012060 Camellia sinensis var. sinensis
CSS0043629 Camellia sinensis var. sinensis
DCAR_014836 Daucus carota
DCAR_017884 Daucus carota
Dinv37207 Davidia involucrata
Duzib106G0640 Durio zibethinus
Duzib128G1460 Durio zibethinus
ECA233G0195 Erigeron canadensis
EL10Ac1g02077 Beta vulgaris
EL10Ac5g11422 Beta vulgaris
Eucgr.K03161 Eucalyptus grandis
FAN02G4491 Fragaria x ananassa
FAN05G1703 Fragaria x ananassa
FAN09G1286 Fragaria x ananassa
FAN14G5191 Fragaria x ananassa
FvH4_6g14340 Fragaria vesca
Glyma.03G172600 Glycine max
Glyma.19G173500 Glycine max
Gohir.A09G158500 Gossypium hirsutum
Gohir.A11G326000 Gossypium hirsutum
Gohir.D09G153900 Gossypium hirsutum
Gohir.D11G344900 Gossypium hirsutum
Gorai.006G175400 Gossypium raimondii
Gorai.007G375300 Gossypium raimondii
GSVIVG01025623001 Vitis vinifera
HanXRQChr14g0459271 Helianthus annuus
Haze_24041 Corylus avellana
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla
HPP92_001685 Vanilla planifolia
Lalb_Chr20g0113181 Lupinus albus
Lj1g0006432 Lotus japonicus
Lj2C100T9 Lonicera japonica
Lsat_1_v5_gn_2_110581 Lactuca sativa
Lsat_1_v5_gn_6_32421 Lactuca sativa
Manes.12G146400 Manihot esculenta
Mapoly0066s0057 Marchantia polymorpha
MBI06_g43519_MAGBIO Magnolia biondii
MBI14_g36720_MAGBIO Magnolia biondii
MBI18_g47300_MAGBIO Magnolia biondii
MD04G1120700 Malus domestica
MD12G1138000 Malus domestica
Medtr7g099970 Medicago truncatula
MELO3C009280.2 Cucumis melo
Migut.J00365 Erythranthe guttata
Migut.L01619 Erythranthe guttata
MSTRG.19104 Avicennia marina
MSTRG.5688 Avicennia marina
Nitab4.5_0000202g0130 Nicotiana tabacum
Nitab4.5_0000216g0050 Nicotiana tabacum
Nitab4.5_0002077g0140 Nicotiana tabacum
Nitab4.5_0012047g0010 Nicotiana tabacum
Nn2g10451 Nelumbo nucifera
Nn2g12909 Nelumbo nucifera
Oeu024364.1 Olea europaea
Oeu041536.1 Olea europaea
Oeu060052.2 Olea europaea
Os03g0279600 Oryza sativa ssp. japonica
Peaxi162Scf00604g00415 Petunia axillaris
PGR004G1112 Punica granatum
PGSC0003DMG400008931 Solanum tuberosum
PGSC0003DMG400010996 Solanum tuberosum
Phvul.001G170200 Phaseolus vulgaris
Potri.006G082400 Populus trichocarpa
Pp3c15_19860 Physcomitrium patens
Pp3c4_10520 Physcomitrium patens
Pp3c9_19700 Physcomitrium patens
Prupe.6G250000 Prunus persica
Psat3g048680 Pisum sativum
PSO339G1692 Papaver somniferum
PSO648G0090 Papaver somniferum
QL01p033097 Quercus lobata
QL05p010485 Quercus lobata
QL07p047160 Quercus lobata
RcHm_v2.0_Chr3g0467391 Rosa chinensis
Rhsim05G0188000 Rhododendron simsii
Sabra06G0062200 Salix brachista
SalBow3G1038 Salvia bowleyana
Sc20g0004500 Simmondsia chinensis
Sed0001771 Sechium edule
Sed0027367 Sechium edule
SEGI_08514 Sequoiadendron giganteum
SEGI_24259 Sequoiadendron giganteum
SEGI_33598 Sequoiadendron giganteum
SGA_v2.0_scaffold126G33824 Striga asiatica
SGA_v2.0_scaffold32G13323 Striga asiatica
SGA_v2.0_scaffold61G21134 Striga asiatica
SGA_v2.0_scaffold87G27174 Striga asiatica
SHI12608 Sapria himalayana
SMO348G0079 Selaginella moellendorffii
Solyc09g010390.2 Solanum lycopersicum
Solyc10g084620.3 Solanum lycopersicum
Sopen04g022580 Solanum pennellii
Sopen09g005130 Solanum pennellii
Sopen10g034060 Solanum pennellii
Sp5g08720 Schrenkiella parvula
TAR369G0217 Trochodendron aralioides
THA.LOC104806580 Tarenaya hassleriana
THA.LOC104823424 Tarenaya hassleriana
Thecc.05G044800 Theobroma cacao
Thhalv10010743m.g Eutrema salsugineum
TPR.G11987 Trifolium pratense
TPR.G14114 Trifolium pratense
TPR.G8932 Trifolium pratense
TWI53G0393 Tripterygium wilfordii
TWI74G1196 Tripterygium wilfordii
unitig_26.g9203 Utricularia gibba
unitig_578.g15706 Utricularia gibba
VMungo1383G1968 Vigna mungo
Zm00001eb012690 Zea mays

User provided reference genes

Program Settings