Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p33870 Brassica napus
A03p41980 Brassica napus
A05p27790 Brassica napus
Aa31LG10G3540 Aethionema arabicum
Aa31LG8G7740 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis
Actinidia06345 Actinidia chinensis
Actinidia06909 Actinidia chinensis
Actinidia16337 Actinidia chinensis
Ah.06g194140 Amaranthus hybridus
AL3G34880 Arabidopsis lyrata
Aqoxy1G00284 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea
AT3G20920 Arabidopsis thaliana
ATR0332G071 Amborella trichopoda
Atru.chr3.2709 Acer truncatum
AUR62000126 Chenopodium quinoa
AUR62019307 Chenopodium quinoa
BcaB04g20618 Brassica carinata
BcaB06g26167 Brassica carinata
BcaB06g26169 Brassica carinata
BcaC01g03532 Brassica carinata
BcaC05g28205 Brassica carinata
BolC1t04284H Brassica oleracea
BolC3t17425H Brassica oleracea
BolC5t33043H Brassica oleracea
BraA01t03495Z Brassica rapa
BraA03t13351Z Brassica rapa
BraA05t21666Z Brassica rapa
C03p51390 Brassica napus
C05p43130 Brassica napus
CAN.G1204.2 Capsicum annuum
CAN.G494.6 Capsicum annuum
CANSAT54G1532 Cannabis sativa
CARHR096800 Cardamine hirsuta
Carub.0003s2090 Capsella rubella
Ca_14874_v3 Cicer arietinum L.
CBR_g54322 Chara braunii
Cc01_g04470 Coffea canephora
CDE05G0340 Ceratophyllum demersum
CDE05G0884 Ceratophyllum demersum
Cfa009777 Carpinus fangiana
Cfa027263 Carpinus fangiana
Ciclev10015746m.g Citrus clementina
CiPaw.13G159900 Carya illinoinensis
CiPaw.14G118500 Carya illinoinensis
ClCG03G013210 Citrullus lanatus
COL.COLO4_07579 Corchorus olitorius
Cpa.g.sc84.48 Carica papaya
Cre02.g084050 Chlamydomonas reinhardtii
CsaV3_1G042790 Cucumis sativus L.
CSS0001002 Camellia sinensis var. sinensis
CSS0043718 Camellia sinensis var. sinensis
DCAR_030049 Daucus carota
Dinv22174 Davidia involucrata
Dinv36255 Davidia involucrata
Duzib150G1120 Durio zibethinus
Duzib168G0314 Durio zibethinus
ECA233G1578 Erigeron canadensis
EL10Ac4g10244 Beta vulgaris
Eucgr.J00761 Eucalyptus grandis
FAN11G1994 Fragaria x ananassa
FAN16G3181 Fragaria x ananassa
FAN21G1987 Fragaria x ananassa
FAN25G2048 Fragaria x ananassa
FvH4_3g28770 Fragaria vesca
Glyma.08G336000 Glycine max
Glyma.18G071100 Glycine max
Gohir.A08G013900 Gossypium hirsutum
Gohir.D08G024400 Gossypium hirsutum
Gorai.004G019800 Gossypium raimondii
GSVIVG01025251001 Vitis vinifera
HanXRQChr02g0051301 Helianthus annuus
HanXRQChr13g0401501 Helianthus annuus
Haze_23143 Corylus avellana
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla
HPP92_024875 Vanilla planifolia
Hund22027 Selenicereus undatus
Lalb_Chr15g0082531 Lupinus albus
Lalb_Chr18g0050451 Lupinus albus
Lalb_Chr20g0115221 Lupinus albus
Lalb_Chr20g0115231 Lupinus albus
Lj1A330G22 Lonicera japonica
Lj2A629T47 Lonicera japonica
Lj6g0003660 Lotus japonicus
Lsat_1_v5_gn_2_31060 Lactuca sativa
Lsat_1_v5_gn_6_26200 Lactuca sativa
Manes.06G163800 Manihot esculenta
Manes.14G003200 Manihot esculenta
Mapoly0080s0045 Marchantia polymorpha
MBI04_g36075_MAGBIO Magnolia biondii
MCO14G148 Micromonas commoda
MD03G1174500 Malus domestica
MD11G1192300 Malus domestica
Medtr3g061490 Medicago truncatula
MELO3C015197.2 Cucumis melo
Migut.D00605 Erythranthe guttata
Migut.N02321 Erythranthe guttata
MSTRG.18430 Avicennia marina
MSTRG.21373 Avicennia marina
MSTRG.21374 Avicennia marina
Nitab4.5_0000023g0700 Nicotiana tabacum
Nitab4.5_0001587g0030 Nicotiana tabacum
Nitab4.5_0002741g0140 Nicotiana tabacum
Nitab4.5_0002786g0020 Nicotiana tabacum
Nn2g15350 Nelumbo nucifera
Nn7g36225 Nelumbo nucifera
Oeu001481.2 Olea europaea
Oeu016680.1 Olea europaea
Os02g0435000 Oryza sativa ssp. japonica
Peaxi162Scf00004g02527 Petunia axillaris
Peaxi162Scf00004g02528 Petunia axillaris
Peaxi162Scf00032g00327 Petunia axillaris
PGR119G1351 Punica granatum
PGSC0003DMG400007339 Solanum tuberosum
PGSC0003DMG400010703 Solanum tuberosum
Phvul.006G062100 Phaseolus vulgaris
Potri.001G257500 Populus trichocarpa
Potri.009G052800 Populus trichocarpa
Pp3c16_12820 Physcomitrium patens
Pp3c27_5530 Physcomitrium patens
Prupe.4G250000 Prunus persica
Psat5g163880 Pisum sativum
PSO339G6315 Papaver somniferum
PSO384G0525 Papaver somniferum
QL01p004640 Quercus lobata
RcHm_v2.0_Chr5g0052271 Rosa chinensis
Rhsim13G0220800 Rhododendron simsii
Sabra09G0038500 Salix brachista
Sabra16G0157500 Salix brachista
Sc09g0000750 Simmondsia chinensis
Sed0000917 Sechium edule
Sed0026402 Sechium edule
SEGI_31334 Sequoiadendron giganteum
SGA_v2.0_scaffold247G44883 Striga asiatica
SGA_v2.0_scaffold8G04586 Striga asiatica
SHI29790 Sapria himalayana
SHI32640 Sapria himalayana
SMO117G0234 Selaginella moellendorffii
Solyc01g008470.3 Solanum lycopersicum
Solyc03g096225.1 Solanum lycopersicum
Sopen01g003990 Solanum pennellii
Sopen01g004010 Solanum pennellii
Sopen11g025430 Solanum pennellii
Sp3g18950 Schrenkiella parvula
TAR057G0002 Trochodendron aralioides
TAR369G0513 Trochodendron aralioides
TAR623G1006 Trochodendron aralioides
THA.LOC104799106 Tarenaya hassleriana
THA.LOC104816878 Tarenaya hassleriana
THA.LOC104824616 Tarenaya hassleriana
Thecc.09G234500 Theobroma cacao
Thhalv10021027m.g Eutrema salsugineum
TPR.G14725 Trifolium pratense
TWI34G1172 Tripterygium wilfordii
TWI60G1037 Tripterygium wilfordii
unitig_27.g24995 Utricularia gibba
unitig_699.g19136 Utricularia gibba
vmacro04153 Vaccinium macrocarpon
VMungo0540G0714 Vigna mungo
Zm00001eb064100 Zea mays
Zm00001eb210940 Zea mays

User provided reference genes

Program Settings