Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p38620 Brassica napus
A05p35340 Brassica napus
Aa31LG8G1340 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis
Actinidia21803 Actinidia chinensis
Actinidia32205 Actinidia chinensis
Ah.15g095150 Amaranthus hybridus
AL3G26340 Arabidopsis lyrata
Aqoxy7G01007 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea
AT3G14110 Arabidopsis thaliana
ATR0568G120 Amborella trichopoda
Atru.chr1.4073 Acer truncatum
Atru.chr1.4083 Acer truncatum
AUR62001444 Chenopodium quinoa
AUR62009921 Chenopodium quinoa
BcaB04g18771 Brassica carinata
BcaB04g18818 Brassica carinata
BcaC01g03958 Brassica carinata
BcaC05g29122 Brassica carinata
BolC3t16938H Brassica oleracea
BolC5t34030H Brassica oleracea
BraA03t13009Z Brassica rapa
BraA05t22344Z Brassica rapa
C03p46730 Brassica napus
C05p53530 Brassica napus
CAN.G1487.1 Capsicum annuum
CAN.G941.28 Capsicum annuum
CANSAT56G3889 Cannabis sativa
CARHR088970 Cardamine hirsuta
Carub.0003s1372 Capsella rubella
Ca_23409_v3 Cicer arietinum L.
CBR_g29854 Chara braunii
CBR_g39266 Chara braunii
Cc06_g01580 Coffea canephora
CDE04G0878 Ceratophyllum demersum
CDE05G2024 Ceratophyllum demersum
CDE05G2107 Ceratophyllum demersum
Ciclev10026090m.g Citrus clementina
CiPaw.01G216100 Carya illinoinensis
ClCG07G014470 Citrullus lanatus
COL.COLO4_30792 Corchorus olitorius
Cpa.g.sc25.148 Carica papaya
Cre10.g460050 Chlamydomonas reinhardtii
CSS0030612 Camellia sinensis var. sinensis
DCAR_016106 Daucus carota
DCAR_022662 Daucus carota
Dinv20409 Davidia involucrata
Dinv37846 Davidia involucrata
Duzib160G0466 Durio zibethinus
Duzib235G0527 Durio zibethinus
ECA247G3177 Erigeron canadensis
ECA248G3608 Erigeron canadensis
EL10Ac7g16443 Beta vulgaris
Eucgr.F02457 Eucalyptus grandis
FAN02G3674 Fragaria x ananassa
FAN05G2230 Fragaria x ananassa
FAN05G4100 Fragaria x ananassa
FAN09G0342 Fragaria x ananassa
FAN14G3095 Fragaria x ananassa
FvH4_6g35160 Fragaria vesca
Glyma.07G041700 Glycine max
Glyma.16G010200 Glycine max
Gohir.A05G138800 Gossypium hirsutum
Gohir.A06G193900 Gossypium hirsutum
Gohir.D05G141000 Gossypium hirsutum
Gohir.D06G201700 Gossypium hirsutum
Gohir.D07G090325 Gossypium hirsutum
Gohir.D08G096333 Gossypium hirsutum
Gorai.001G096600 Gossypium raimondii
Gorai.004G102400 Gossypium raimondii
Gorai.009G145200 Gossypium raimondii
Gorai.010G235500 Gossypium raimondii
GSVIVG01016719001 Vitis vinifera
HanXRQChr09g0277121 Helianthus annuus
HanXRQChr15g0497161 Helianthus annuus
Haze_16075 Corylus avellana
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla
HPP92_003012 Vanilla planifolia
HPP92_027544 Vanilla planifolia
Hund18675 Selenicereus undatus
Lalb_Chr04g0253731 Lupinus albus
Lalb_Chr17g0343461 Lupinus albus
Lj3g0026199 Lotus japonicus
Lj5A32G57 Lonicera japonica
Lj9C535T4 Lonicera japonica
Lsat_1_v5_gn_4_91400 Lactuca sativa
Manes.11G016500 Manihot esculenta
Mapoly0108s0002 Marchantia polymorpha
Mapoly0110s0050 Marchantia polymorpha
MBI02_g13231_MAGBIO Magnolia biondii
MCO04G449 Micromonas commoda
MCO11G340 Micromonas commoda
MCO14G328 Micromonas commoda
MCO15G457 Micromonas commoda
MD09G1178200 Malus domestica
MD09G1178400 Malus domestica
MD17G1148400 Malus domestica
Medtr8g022040 Medicago truncatula
MELO3C022680.2 Cucumis melo
Migut.L01998 Erythranthe guttata
MSTRG.5591 Avicennia marina
Nitab4.5_0000326g0270 Nicotiana tabacum
Nitab4.5_0000780g0100 Nicotiana tabacum
Nitab4.5_0000845g0110 Nicotiana tabacum
Nitab4.5_0003342g0020 Nicotiana tabacum
Nitab4.5_0006980g0020 Nicotiana tabacum
Nn6g35672 Nelumbo nucifera
Nn8g38578 Nelumbo nucifera
Oeu064511.1 Olea europaea
Os01g0510600 Oryza sativa ssp. japonica
Os02g0586800 Oryza sativa ssp. japonica
Peaxi162Scf00043g02929 Petunia axillaris
Peaxi162Scf01157g00111 Petunia axillaris
PGR119G1615 Punica granatum
PGSC0003DMG400003792 Solanum tuberosum
PGSC0003DMG400014712 Solanum tuberosum
Phvul.006G206500 Phaseolus vulgaris
Potri.001G166000 Populus trichocarpa
Pp3c11_3130 Physcomitrium patens
PRCOL_00003077 Prasinoderma coloniale
PRCOL_00003238 Prasinoderma coloniale
Prupe.3G037600 Prunus persica
Psat4g167320 Pisum sativum
PSO386G0078 Papaver somniferum
PSO724G0024 Papaver somniferum
QL05p003761 Quercus lobata
RcHm_v2.0_Chr2g0146421 Rosa chinensis
RcHm_v2.0_Chr5g0074611 Rosa chinensis
Rhsim03G0211800 Rhododendron simsii
Rhsim08G0241200 Rhododendron simsii
Sabra01G0127300 Salix brachista
SalBow5G0362 Salvia bowleyana
SalBow5G3644 Salvia bowleyana
Sc15g0000580 Simmondsia chinensis
Sed0018133 Sechium edule
SGA_v2.0_scaffold110G31269 Striga asiatica
SGA_v2.0_scaffold382G50397 Striga asiatica
SMO141G0180 Selaginella moellendorffii
Solyc06g008160.4 Solanum lycopersicum
Solyc09g072880.3 Solanum lycopersicum
Sopen06g002970 Solanum pennellii
Sopen09g028680 Solanum pennellii
Sopen09g028700 Solanum pennellii
Sp3g12370 Schrenkiella parvula
TAR468G0014 Trochodendron aralioides
TAR624G0589 Trochodendron aralioides
TAR624G0904 Trochodendron aralioides
TAR626G1097 Trochodendron aralioides
THA.LOC104822665 Tarenaya hassleriana
Thecc.06G124200 Theobroma cacao
Thhalv10021156m.g Eutrema salsugineum
TPR.G29997 Trifolium pratense
TWI14G0995 Tripterygium wilfordii
TWI23G0003 Tripterygium wilfordii
unitig_27.g24839 Utricularia gibba
unitig_27.g24862 Utricularia gibba
unitig_699.g19383 Utricularia gibba
vmacro06407 Vaccinium macrocarpon
VMungo0540G1553 Vigna mungo
Zm00001eb245590 Zea mays
Zm00001eb308830 Zea mays

User provided reference genes

Program Settings