Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p37060 Brassica napus
A10p02630 Brassica napus
Aa31LG1G20640 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis
Actinidia04510 Actinidia chinensis
Actinidia40118 Actinidia chinensis
Ah.04g154140 Amaranthus hybridus
AL1G13800 Arabidopsis lyrata
Aqoxy5G00400 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea
AT1G04200 Arabidopsis thaliana
ATR0665G111 Amborella trichopoda
Atru.chr4.2362 Acer truncatum
AUR62032000 Chenopodium quinoa
AUR62033626 Chenopodium quinoa
AUR62038653 Chenopodium quinoa
BcaC03g15924 Brassica carinata
BcaC05g24462 Brassica carinata
BcaC05g24464 Brassica carinata
BcaC05g27642 Brassica carinata
BcaC06g35467 Brassica carinata
BcaC07g36931 Brassica carinata
BolC2t09698H Brassica oleracea
BolC5t29020H Brassica oleracea
BolC5t32353H Brassica oleracea
BolC8t46894H Brassica oleracea
C05p02410 Brassica napus
C05p36300 Brassica napus
C08p00930 Brassica napus
CAN.G1437.8 Capsicum annuum
CANSAT78G1027 Cannabis sativa
CARHR003530 Cardamine hirsuta
Carub.0001s0339 Capsella rubella
Ca_10850_v3 Cicer arietinum L.
CBR_g41568 Chara braunii
Cc03_g04290 Coffea canephora
CDE04G1738 Ceratophyllum demersum
CDE07G0702 Ceratophyllum demersum
Cfa008449 Carpinus fangiana
Cfa023822 Carpinus fangiana
Ciclev10004430m.g Citrus clementina
CiPaw.01G195300 Carya illinoinensis
CiPaw.02G120800 Carya illinoinensis
ClCG05G004860 Citrullus lanatus
COL.COLO4_15960 Corchorus olitorius
COL.COLO4_21093 Corchorus olitorius
COL.COLO4_21565 Corchorus olitorius
Cpa.g.sc44.123 Carica papaya
CsaV3_3G012900 Cucumis sativus L.
CSS0018932 Camellia sinensis var. sinensis
CSS0020739 Camellia sinensis var. sinensis
CSS0027981 Camellia sinensis var. sinensis
CSS0043956 Camellia sinensis var. sinensis
CSS0047348 Camellia sinensis var. sinensis
CSS0047775 Camellia sinensis var. sinensis
CSS0049416 Camellia sinensis var. sinensis
DCAR_002367 Daucus carota
DCAR_027243 Daucus carota
DCAR_030686 Daucus carota
Dinv14046 Davidia involucrata
Dinv44576 Davidia involucrata
Duzib052G0975 Durio zibethinus
Duzib212G0656 Durio zibethinus
ECA234G1583 Erigeron canadensis
EL10Ac3g06499 Beta vulgaris
Eucgr.H03411 Eucalyptus grandis
FAN12G0664 Fragaria x ananassa
FAN17G0057 Fragaria x ananassa
FAN17G0101 Fragaria x ananassa
FAN22G1739 Fragaria x ananassa
FvH4_4g01230 Fragaria vesca
Glyma.10G003000 Glycine max
Glyma.10G243900 Glycine max
Glyma.15G201600 Glycine max
Glyma.19G081300 Glycine max
Glyma.20G150500 Glycine max
Gohir.A09G219100 Gossypium hirsutum
Gohir.D09G221300 Gossypium hirsutum
Gorai.006G242500 Gossypium raimondii
GSVIVG01018042001 Vitis vinifera
HanXRQChr10g0294741 Helianthus annuus
HanXRQChr16g0513791 Helianthus annuus
Haze_11233 Corylus avellana
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla
HPP92_015629 Vanilla planifolia
HPP92_015636 Vanilla planifolia
Lalb_Chr03g0037471 Lupinus albus
Lalb_Chr06g0160731 Lupinus albus
Lj3C728G3 Lonicera japonica
Lj5g0004472 Lotus japonicus
Lj6A646G73 Lonicera japonica
Lsat_1_v5_gn_5_104320 Lactuca sativa
Manes.03G173100 Manihot esculenta
Manes.15G033000 Manihot esculenta
Mapoly0021s0008 Marchantia polymorpha
MBI11_g20784_MAGBIO Magnolia biondii
MCO01G401 Micromonas commoda
MD13G1199900 Malus domestica
MD16G1199900 Malus domestica
Medtr1g102840 Medicago truncatula
MELO3C006500.2 Cucumis melo
Migut.G00384 Erythranthe guttata
Migut.N00211 Erythranthe guttata
MSTRG.21878 Avicennia marina
MSTRG.4062 Avicennia marina
Nitab4.5_0000090g0250 Nicotiana tabacum
Nitab4.5_0002541g0010 Nicotiana tabacum
Nn1g02457 Nelumbo nucifera
Nn6g34169 Nelumbo nucifera
Oeu064245.1 Olea europaea
Oeu064246.1 Olea europaea
Os01g0773100 Oryza sativa ssp. japonica
Peaxi162Scf00316g00517 Petunia axillaris
PGR004G1328 Punica granatum
PGSC0003DMG400006446 Solanum tuberosum
Phvul.007G061900 Phaseolus vulgaris
Phvul.007G263800 Phaseolus vulgaris
Phvul.007G278300 Phaseolus vulgaris
Potri.010G081800 Populus trichocarpa
Prupe.1G021300 Prunus persica
Psat6g204080 Pisum sativum
PSO170G6248 Papaver somniferum
PSO210G2230 Papaver somniferum
QL06p000928 Quercus lobata
RcHm_v2.0_Chr4g0387781 Rosa chinensis
RcHm_v2.0_Chr4g0393591 Rosa chinensis
RcHm_v2.0_Chr4g0393601 Rosa chinensis
RcHm_v2.0_Chr4g0393611 Rosa chinensis
Rhsim04G0197200 Rhododendron simsii
Sabra08G0120100 Salix brachista
Sabra10G0061100 Salix brachista
SalBow2G3046 Salvia bowleyana
SalBow3G0915 Salvia bowleyana
Sc19g0003940 Simmondsia chinensis
Sed0002276 Sechium edule
Sed0019342 Sechium edule
SEGI_08230 Sequoiadendron giganteum
SEGI_13286 Sequoiadendron giganteum
SEGI_41464 Sequoiadendron giganteum
SGA_v2.0_scaffold191G40427 Striga asiatica
SGA_v2.0_scaffold79G25594 Striga asiatica
SHI00525 Sapria himalayana
SHI00526 Sapria himalayana
SHI00527 Sapria himalayana
SMO340G0218 Selaginella moellendorffii
Solyc09g082680.3 Solanum lycopersicum
Sopen09g031540 Solanum pennellii
Sp1g03020 Schrenkiella parvula
TAR362G1241 Trochodendron aralioides
THA.LOC104826064 Tarenaya hassleriana
Thecc.04G238800 Theobroma cacao
Thhalv10006925m.g Eutrema salsugineum
TPR.G26109 Trifolium pratense
TPR.G734 Trifolium pratense
TWI73G1293 Tripterygium wilfordii
unitig_736.g22459 Utricularia gibba
unitig_899.g14876 Utricularia gibba
vmacro08371 Vaccinium macrocarpon
VMungo0720G0919 Vigna mungo
VMungo0720G0936 Vigna mungo
Zm00001eb151770 Zea mays
Zm00001eb370110 Zea mays

User provided reference genes

Program Settings