Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p18090 Brassica napus
A03p14230 Brassica napus
A03p14260 Brassica napus
A06p02900 Brassica napus
A10p12380 Brassica napus
Aa31LG3G11030 Aethionema arabicum
Actinidia35360 Actinidia chinensis
Ah.06g182580 Amaranthus hybridus
AL7G25970 Arabidopsis lyrata
AL8G30610 Arabidopsis lyrata
Aqoxy1G03059 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FD90PG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0IC2B Arachis hypogaea
AT1G50720 Arabidopsis thaliana
AT4G26880 Arabidopsis thaliana
AT5G55110 Arabidopsis thaliana
Atru.chr2.3491 Acer truncatum
AUR62015821 Chenopodium quinoa
AUR62015823 Chenopodium quinoa
AUR62015824 Chenopodium quinoa
AUR62020394 Chenopodium quinoa
AUR62020395 Chenopodium quinoa
AUR62020397 Chenopodium quinoa
AUR62020398 Chenopodium quinoa
BcaB01g04366 Brassica carinata
BcaB01g04367 Brassica carinata
BcaB05g22181 Brassica carinata
BcaB07g33511 Brassica carinata
BcaB08g35875 Brassica carinata
BcaC01g06347 Brassica carinata
BcaC01g06348 Brassica carinata
BcaC01g06349 Brassica carinata
BcaC03g14266 Brassica carinata
BcaC04g20269 Brassica carinata
BcaC08g43251 Brassica carinata
BcaNung03559 Brassica carinata
BolC1t02239H Brassica oleracea
BolC3t14083H Brassica oleracea
BolC3t14084H Brassica oleracea
BolC6t35710H Brassica oleracea
BolC9t57436H Brassica oleracea
BraA01t01764Z Brassica rapa
BraA03t10723Z Brassica rapa
BraA06t23496Z Brassica rapa
BraA10t43333Z Brassica rapa
C01p23050 Brassica napus
C06p05970 Brassica napus
C09p45880 Brassica napus
CAN.G112.17 Capsicum annuum
CANSAT11G1041 Cannabis sativa
CARHR040820 Cardamine hirsuta
CARHR234490 Cardamine hirsuta
CARHR268450 Cardamine hirsuta
Carub.0001s3975 Capsella rubella
Carub.0007s1397 Capsella rubella
Carub.0008s1540 Capsella rubella
Ca_03254_v3 Cicer arietinum L.
CBR_g37368 Chara braunii
Cc05_g14030 Coffea canephora
Ciclev10010614m.g Citrus clementina
CiPaw.12G131900 Carya illinoinensis
ClCG10G005000 Citrullus lanatus
COL.COLO4_09694 Corchorus olitorius
Cpa.g.sc12.272 Carica papaya
CsaV3_3G004660 Cucumis sativus L.
DCAR_016717 Daucus carota
DCAR_022585 Daucus carota
Duzib170G0654 Durio zibethinus
Duzib213G0508 Durio zibethinus
ECA236G1539 Erigeron canadensis
ECA236G2715 Erigeron canadensis
EL10Ac4g07762 Beta vulgaris
EL10Ac4g07764 Beta vulgaris
Eucgr.F00736 Eucalyptus grandis
FAN11G2993 Fragaria x ananassa
FAN16G2316 Fragaria x ananassa
FAN21G0700 Fragaria x ananassa
FAN25G0038 Fragaria x ananassa
FAN25G2170 Fragaria x ananassa
FvH4_3g23190 Fragaria vesca
Glyma.08G320000 Glycine max
Glyma.18G092400 Glycine max
Gohir.A01G082600 Gossypium hirsutum
Gohir.A04G013400 Gossypium hirsutum
Gohir.D01G069200 Gossypium hirsutum
Gohir.D05G372800 Gossypium hirsutum
Gorai.002G091500 Gossypium raimondii
Gorai.009G441300 Gossypium raimondii
HanXRQChr03g0076711 Helianthus annuus
HanXRQChr11g0334081 Helianthus annuus
HanXRQChr13g0408531 Helianthus annuus
HanXRQChr17g0546371 Helianthus annuus
Haze_09713 Corylus avellana
Lalb_Chr20g0115381 Lupinus albus
Lj6g0011908 Lotus japonicus
Lj6g0017870 Lotus japonicus
Lj8C171T1 Lonicera japonica
Lsat_1_v5_gn_2_77680 Lactuca sativa
Lsat_1_v5_gn_3_15001 Lactuca sativa
Lsat_1_v5_gn_7_114360 Lactuca sativa
Lsat_1_v5_gn_7_114381 Lactuca sativa
Lsat_1_v5_gn_9_92180 Lactuca sativa
Manes.03G133800 Manihot esculenta
Manes.15G068600 Manihot esculenta
MD03G1197000 Malus domestica
MD11G1213000 Malus domestica
Medtr3g053240 Medicago truncatula
Medtr4g044463 Medicago truncatula
MELO3C014164.2 Cucumis melo
Migut.J01605 Erythranthe guttata
Migut.K00212 Erythranthe guttata
Nitab4.5_0002598g0080 Nicotiana tabacum
Nitab4.5_0002598g0090 Nicotiana tabacum
Nitab4.5_0004983g0010 Nicotiana tabacum
Nitab4.5_0011467g0030 Nicotiana tabacum
Nitab4.5_0011467g0070 Nicotiana tabacum
Nitab4.5_0012195g0010 Nicotiana tabacum
Nn1g03453 Nelumbo nucifera
Oeu028003.1 Olea europaea
Oeu039200.1 Olea europaea
Peaxi162Scf00126g00115 Petunia axillaris
Peaxi162Scf01626g00015 Petunia axillaris
Peaxi162Scf01626g00017 Petunia axillaris
PGR083G1129 Punica granatum
PGSC0003DMG400007032 Solanum tuberosum
PGSC0003DMG402027015 Solanum tuberosum
Phvul.006G047200 Phaseolus vulgaris
Potri.001G356600 Populus trichocarpa
Potri.011G080800 Populus trichocarpa
Prupe.4G218300 Prunus persica
Psat5g173760 Pisum sativum
PSO135G0247 Papaver somniferum
PSO541G1695 Papaver somniferum
PSO541G4299 Papaver somniferum
QL08p009100 Quercus lobata
RcHm_v2.0_Chr5g0040831 Rosa chinensis
RhsimUnG0248700 Rhododendron simsii
Sabra16G0234300 Salix brachista
Sabra16G0234600 Salix brachista
SalBow1G5576 Salvia bowleyana
Sc07g0002830 Simmondsia chinensis
Sc16g0005860 Simmondsia chinensis
Sed0014123 Sechium edule
SGA_v2.0_scaffold12G06084 Striga asiatica
SGA_v2.0_scaffold66G22369 Striga asiatica
Solyc05g050730.1 Solanum lycopersicum
Solyc06g073220.1 Solanum lycopersicum
Sopen05g029140 Solanum pennellii
Sp1g37560 Schrenkiella parvula
Sp6g17040 Schrenkiella parvula
Sp7g24830 Schrenkiella parvula
TAR627G1104 Trochodendron aralioides
TAR629G2714 Trochodendron aralioides
THA.LOC104798766 Tarenaya hassleriana
THA.LOC104811623 Tarenaya hassleriana
THA.LOC104817674 Tarenaya hassleriana
Thecc.07G032000 Theobroma cacao
Thhalv10012189m.g Eutrema salsugineum
Thhalv10014856m.g Eutrema salsugineum
Thhalv10027097m.g Eutrema salsugineum
TPR.G14421 Trifolium pratense
TPR.G14428 Trifolium pratense
TWI39G1080 Tripterygium wilfordii
VMungo0540G0503 Vigna mungo

User provided reference genes

Program Settings