Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p19950 Brassica napus
A06p15850 Brassica napus
Aa31LG4G5700 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.454 Anthoceros agrestis
Actinidia15370 Actinidia chinensis
Actinidia22506 Actinidia chinensis
Ah.10g035530 Amaranthus hybridus
AL1G32470 Arabidopsis lyrata
AL2G35430 Arabidopsis lyrata
AL2G41610 Arabidopsis lyrata
AL3G42160 Arabidopsis lyrata
AL5G17660 Arabidopsis lyrata
AL7G10400 Arabidopsis lyrata
AL7G11380 Arabidopsis lyrata
AL8G23230 Arabidopsis lyrata
Aqoxy6G01229 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.FS02K0 Arachis hypogaea
AT1G19740 Arabidopsis thaliana
AT1G75460 Arabidopsis thaliana
ATR0680G160 Amborella trichopoda
Atru.chr13.385 Acer truncatum
AUR62034542 Chenopodium quinoa
BcaB05g24908 Brassica carinata
BcaB07g31988 Brassica carinata
BcaC03g15576 Brassica carinata
BolC2t09292H Brassica oleracea
BolC5t30525H Brassica oleracea
BraA02t07032Z Brassica rapa
BraA02t07033Z Brassica rapa
BraA06t24697Z Brassica rapa
C02p32610 Brassica napus
C05p18170 Brassica napus
CAN.G851.33 Capsicum annuum
CANSAT25G3810 Cannabis sativa
CARHR020270 Cardamine hirsuta
CARHR068870 Cardamine hirsuta
Carub.0001s1929 Capsella rubella
Carub.0002s2234 Capsella rubella
Ca_02070_v3 Cicer arietinum L.
CBR_g46856 Chara braunii
CBR_g51048 Chara braunii
CBR_g8224 Chara braunii
Cc10_g02310 Coffea canephora
CDE03G0026 Ceratophyllum demersum
Cfa013888 Carpinus fangiana
Ciclev10002101m.g Citrus clementina
CiPaw.07G155800 Carya illinoinensis
CiPaw.08G061400 Carya illinoinensis
ClCG05G018660 Citrullus lanatus
COL.COLO4_26227 Corchorus olitorius
Cpa.g.sc698.2 Carica papaya
Cre02.g141550 Chlamydomonas reinhardtii
CsaV3_3G045520 Cucumis sativus L.
CSS0003618 Camellia sinensis var. sinensis
DCAR_009955 Daucus carota
Dinv31796 Davidia involucrata
Dinv39468 Davidia involucrata
Duzib041G0460 Durio zibethinus
Duzib093G0381 Durio zibethinus
Duzib116G0866 Durio zibethinus
ECA232G0130 Erigeron canadensis
EL10Ac1g00581 Beta vulgaris
Eucgr.F01605 Eucalyptus grandis
Eucgr.F01853 Eucalyptus grandis
FAN03G3294 Fragaria x ananassa
FAN09G3639 Fragaria x ananassa
FAN13G0889 Fragaria x ananassa
FAN15G2637 Fragaria x ananassa
FAN17G2329 Fragaria x ananassa
FAN20G0669 Fragaria x ananassa
FAN21G1121 Fragaria x ananassa
FAN27G0767 Fragaria x ananassa
FvH4_2g39180 Fragaria vesca
Glyma.04G028400 Glycine max
Glyma.06G028500 Glycine max
Glyma.14G070400 Glycine max
Gohir.A01G113800 Gossypium hirsutum
Gohir.A05G189500 Gossypium hirsutum
Gohir.A06G006700 Gossypium hirsutum
Gohir.D01G101600 Gossypium hirsutum
Gohir.D05G192800 Gossypium hirsutum
Gohir.D06G002460 Gossypium hirsutum
Gorai.002G126100 Gossypium raimondii
Gorai.009G198000 Gossypium raimondii
Gorai.010G007200 Gossypium raimondii
Haze_22565 Corylus avellana
HPP92_007934 Vanilla planifolia
Lalb_Chr23g0266421 Lupinus albus
Lj1g0013800 Lotus japonicus
Lj3g0013855 Lotus japonicus
Lj4C32T10 Lonicera japonica
LjContig00412g0021689 Lotus japonicus
Lsat_1_v5_gn_5_25761 Lactuca sativa
Manes.18G022200 Manihot esculenta
Mapoly0123s0028 Marchantia polymorpha
MBI01_g12679_MAGBIO Magnolia biondii
MD08G1023400 Malus domestica
MD15G1020800 Malus domestica
Medtr3g112420 Medicago truncatula
MELO3C003788.2 Cucumis melo
Migut.N03118 Erythranthe guttata
MSTRG.24272 Avicennia marina
Nitab4.5_0001861g0130 Nicotiana tabacum
Nitab4.5_0001963g0020 Nicotiana tabacum
Nitab4.5_0002156g0110 Nicotiana tabacum
Nn1g05970 Nelumbo nucifera
Nn5g29149 Nelumbo nucifera
Nn5g30640 Nelumbo nucifera
Oeu030408.1 Olea europaea
Oeu030608.1 Olea europaea
Os03g0409100 Oryza sativa ssp. japonica
Os07g0509700 Oryza sativa ssp. japonica
Peaxi162Scf00189g00121 Petunia axillaris
PGSC0003DMG400003704 Solanum tuberosum
Phvul.001G010700 Phaseolus vulgaris
Phvul.009G012900 Phaseolus vulgaris
Potri.002G029900 Populus trichocarpa
Potri.005G232800 Populus trichocarpa
Pp3c2_28030 Physcomitrium patens
PRCOL_00005671 Prasinoderma coloniale
Prupe.1G372600 Prunus persica
Psat0s471g0440 Pisum sativum
PSO541G5233 Papaver somniferum
PSO675G8115 Papaver somniferum
QL02p010362 Quercus lobata
RcHm_v2.0_Chr5g0055761 Rosa chinensis
RcHm_v2.0_Chr6g0290711 Rosa chinensis
RcHm_v2.0_Chr6g0301881 Rosa chinensis
Rhsim06G0027900 Rhododendron simsii
Sabra02G0023800 Salix brachista
SalBow8G0366 Salvia bowleyana
SalBow8G2486 Salvia bowleyana
Sc15g0007210 Simmondsia chinensis
Sed0026579 Sechium edule
Sed0026661 Sechium edule
SEGI_19140 Sequoiadendron giganteum
SEGI_26379 Sequoiadendron giganteum
SGA_v2.0_scaffold326G48739 Striga asiatica
SMO340G0026 Selaginella moellendorffii
Solyc04g080870.1 Solanum lycopersicum
Sopen04g034450 Solanum pennellii
Sp1g17580 Schrenkiella parvula
Sp5g30610 Schrenkiella parvula
TAR068G0006 Trochodendron aralioides
TAR376G0822 Trochodendron aralioides
THA.LOC104809066 Tarenaya hassleriana
THA.LOC104813810 Tarenaya hassleriana
Thecc.08G035100 Theobroma cacao
Thhalv10008437m.g Eutrema salsugineum
Thhalv10019638m.g Eutrema salsugineum
Thhalv10027193m.g Eutrema salsugineum
Thhalv10029286m.g Eutrema salsugineum
TPR.G12390 Trifolium pratense
TWI36G0841 Tripterygium wilfordii
TWI56G1281 Tripterygium wilfordii
unitig_21.g20157 Utricularia gibba
unitig_22.g6787 Utricularia gibba
VMungo0647G1706 Vigna mungo
VMungo1309G1438 Vigna mungo
VMungo1383G3523 Vigna mungo
Zm00001eb019650 Zea mays
Zm00001eb105790 Zea mays
Zm00001eb322430 Zea mays
Zm00001eb380450 Zea mays

User provided reference genes

Program Settings