Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p36320 Brassica napus
A04p12300 Brassica napus
A06p40150 Brassica napus
A09p03960 Brassica napus
Aa31LG2G4120 Aethionema arabicum
Aa31LG9G16500 Aethionema arabicum
Actinidia17562 Actinidia chinensis
AL5G18970 Arabidopsis lyrata
AL7G50740 Arabidopsis lyrata
Aqoxy7G01875 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AUQB01 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea
AT3G29075 Arabidopsis thaliana
ATR0068G041 Amborella trichopoda
ATR0564G373 Amborella trichopoda
AUR62024487 Chenopodium quinoa
AUR62026072 Chenopodium quinoa
BcaB02g07977 Brassica carinata
BcaB04g19502 Brassica carinata
BcaB06g27342 Brassica carinata
BcaB07g30098 Brassica carinata
BcaC03g17550 Brassica carinata
BcaC04g22014 Brassica carinata
BcaC04g23848 Brassica carinata
BcaC06g30878 Brassica carinata
BcaC06g33669 Brassica carinata
BolC2t11577H Brassica oleracea
BolC4t26181H Brassica oleracea
BolC7t44320H Brassica oleracea
BolC9t53349H Brassica oleracea
BraA02t08631Z Brassica rapa
BraA06t26930Z Brassica rapa
BraA09t36033Z Brassica rapa
C02p55290 Brassica napus
C04p45980 Brassica napus
C07p37990 Brassica napus
C09p04180 Brassica napus
C09p24610 Brassica napus
CAN.G206.175 Capsicum annuum
CAN.G979.4 Capsicum annuum
CANSAT64G0152 Cannabis sativa
CARHR152260 Cardamine hirsuta
CARHR262720 Cardamine hirsuta
Carub.0005s0780 Capsella rubella
Carub.0007s3638 Capsella rubella
Ca_04851_v3 Cicer arietinum L.
Cc07_g03620 Coffea canephora
CDE04G0194 Ceratophyllum demersum
CDE07G0818 Ceratophyllum demersum
Cfa007586 Carpinus fangiana
Ciclev10011817m.g Citrus clementina
CiPaw.03G023900 Carya illinoinensis
CiPaw.04G015000 Carya illinoinensis
ClCG10G015320 Citrullus lanatus
COL.COLO4_10350 Corchorus olitorius
Cpa.g.sc14.110 Carica papaya
CsaV3_3G041180 Cucumis sativus L.
CSS0006568 Camellia sinensis var. sinensis
CSS0028300 Camellia sinensis var. sinensis
DCAR_011081 Daucus carota
DCAR_025385 Daucus carota
Dinv11507 Davidia involucrata
Duzib147G0137 Durio zibethinus
Duzib264G0373 Durio zibethinus
ECA232G3508 Erigeron canadensis
ECA238G2462 Erigeron canadensis
EL10Ac3g07125 Beta vulgaris
Eucgr.I02023 Eucalyptus grandis
FAN02G2477 Fragaria x ananassa
FAN05G4997 Fragaria x ananassa
FAN09G1282 Fragaria x ananassa
FAN14G0777 Fragaria x ananassa
FvH4_6g48020 Fragaria vesca
FvH4_6g48030 Fragaria vesca
Glyma.13G061100 Glycine max
Glyma.19G025400 Glycine max
Gohir.A07G206400 Gossypium hirsutum
Gohir.A09G013500 Gossypium hirsutum
Gohir.D07G212500 Gossypium hirsutum
Gohir.D09G012100 Gossypium hirsutum
Gorai.001G240600 Gossypium raimondii
Gorai.006G014100 Gossypium raimondii
GSVIVG01011458001 Vitis vinifera
HanXRQChr09g0264261 Helianthus annuus
HanXRQChr14g0448551 Helianthus annuus
Haze_14501 Corylus avellana
Hma1.2p1_0409F.1_g146740 Hydrangea macrophylla
Hma1.2p1_1191F.1_g265440 Hydrangea macrophylla
HPP92_015352 Vanilla planifolia
HPP92_017447 Vanilla planifolia
HPP92_017452 Vanilla planifolia
Hund13187 Selenicereus undatus
Lalb_Chr02g0159271 Lupinus albus
Lalb_Chr21g0318581 Lupinus albus
Lj2g0019168 Lotus japonicus
Lju41A9G72 Lonicera japonica
Lju41A9T72 Lonicera japonica
Lsat_1_v5_gn_2_90061 Lactuca sativa
Lsat_1_v5_gn_4_170381 Lactuca sativa
Manes.01G101300 Manihot esculenta
Manes.02G048440 Manihot esculenta
Manes.02G048520 Manihot esculenta
MBI02_g14228_MAGBIO Magnolia biondii
MD09G1054700 Malus domestica
MD09G1054800 Malus domestica
MD17G1052800 Malus domestica
MD17G1052900 Malus domestica
Medtr6g012780 Medicago truncatula
MELO3C009847.2 Cucumis melo
Migut.H00679 Erythranthe guttata
MSTRG.23917 Avicennia marina
MSTRG.3030 Avicennia marina
Nitab4.5_0000212g0100 Nicotiana tabacum
Nitab4.5_0000568g0190 Nicotiana tabacum
Nitab4.5_0001591g0190 Nicotiana tabacum
Nitab4.5_0010283g0040 Nicotiana tabacum
Nn4g23264 Nelumbo nucifera
Oeu000842.1 Olea europaea
Oeu003254.1 Olea europaea
Oeu035937.1 Olea europaea
Os02g0743600 Oryza sativa ssp. japonica
Os06g0232000 Oryza sativa ssp. japonica
Peaxi162Scf00166g01032 Petunia axillaris
Peaxi162Scf00629g00015 Petunia axillaris
PGR004G0671 Punica granatum
PGSC0003DMG400001431 Solanum tuberosum
PGSC0003DMG400025147 Solanum tuberosum
Phvul.004G031300 Phaseolus vulgaris
Potri.004G127400 Populus trichocarpa
Potri.017G087200 Populus trichocarpa
Prupe.3G263700 Prunus persica
Prupe.3G263800 Prunus persica
Psat1g070960 Pisum sativum
PSO017G0491 Papaver somniferum
PSO063G6665 Papaver somniferum
QL02p084787 Quercus lobata
RcHm_v2.0_Chr2g0167311 Rosa chinensis
RcHm_v2.0_Chr2g0167321 Rosa chinensis
Rhsim08G0071400 Rhododendron simsii
Sabra04G0090600 Salix brachista
Sabra17G0077000 Salix brachista
Sc10g0003440 Simmondsia chinensis
Sed0004307 Sechium edule
SEGI_04222 Sequoiadendron giganteum
SGA_v2.0_scaffold413G51176 Striga asiatica
SHI01989 Sapria himalayana
Solyc02g067150.4 Solanum lycopersicum
Solyc02g088260.3 Solanum lycopersicum
Sopen02g016320 Solanum pennellii
Sopen02g032940 Solanum pennellii
Sp7g02420 Schrenkiella parvula
TAR374G0423 Trochodendron aralioides
THA.LOC104805480 Tarenaya hassleriana
THA.LOC104823070 Tarenaya hassleriana
Thecc.04G087100 Theobroma cacao
Thhalv10027782m.g Eutrema salsugineum
TPR.G8812 Trifolium pratense
TWI32G0780 Tripterygium wilfordii
TWI34G0816 Tripterygium wilfordii
TWI34G1400 Tripterygium wilfordii
unitig_21.g20933 Utricularia gibba
vmacro18177 Vaccinium macrocarpon
VMungo0464G1715 Vigna mungo
Zm00001eb254420 Zea mays

User provided reference genes

Program Settings