Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p16180 Brassica napus
A09p58220 Brassica napus
A10p03880 Brassica napus
Aa31LG7G15060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1224 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2571 Anthoceros agrestis
Actinidia00553 Actinidia chinensis
Actinidia00554 Actinidia chinensis
Actinidia02232 Actinidia chinensis
Actinidia07486 Actinidia chinensis
Actinidia08377 Actinidia chinensis
Actinidia27869 Actinidia chinensis
Actinidia27870 Actinidia chinensis
Actinidia33407 Actinidia chinensis
Ah.01g019090 Amaranthus hybridus
AL4G10650 Arabidopsis lyrata
Aqoxy5G01543 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2GC3QC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7SB82T Arachis hypogaea
AT2G21470 Arabidopsis thaliana
ATR0665G307 Amborella trichopoda
Atru.chr5.3085 Acer truncatum
AUR62011281 Chenopodium quinoa
AUR62016776 Chenopodium quinoa
BcaB01g05537 Brassica carinata
BcaC02g08787 Brassica carinata
BcaC07g41147 Brassica carinata
BolC3t13033H Brassica oleracea
BolC4t26661H Brassica oleracea
BolC5t29350H Brassica oleracea
BolC8t51713H Brassica oleracea
BraA04t17257Z Brassica rapa
BraA09t41210Z Brassica rapa
BraA10t42664Z Brassica rapa
C03p05030 Brassica napus
C03p05040 Brassica napus
C04p50650 Brassica napus
C08p41520 Brassica napus
CAN.G1544.10 Capsicum annuum
CANSAT11G1266 Cannabis sativa
CARHR112390 Cardamine hirsuta
Carub.0004s0051 Capsella rubella
Ca_23903_v3 Cicer arietinum L.
CBR_g4362 Chara braunii
Cc02_g17210 Coffea canephora
CDE05G2827 Ceratophyllum demersum
Cfa005060 Carpinus fangiana
Cfa025508 Carpinus fangiana
Ciclev10028169m.g Citrus clementina
CiPaw.05G070100 Carya illinoinensis
CiPaw.06G132400 Carya illinoinensis
ClCG11G004120 Citrullus lanatus
COL.COLO4_25994 Corchorus olitorius
Cpa.g.sc1026.1 Carica papaya
Cre06.g296983 Chlamydomonas reinhardtii
CsaV3_2G015050 Cucumis sativus L.
CSS0003672 Camellia sinensis var. sinensis
CSS0008255 Camellia sinensis var. sinensis
DCAR_003656 Daucus carota
Dinv23486 Davidia involucrata
Dinv42035 Davidia involucrata
Duzib052G0126 Durio zibethinus
Duzib132G0379 Durio zibethinus
Duzib248G1279 Durio zibethinus
ECA236G2358 Erigeron canadensis
EL10Ac9g21687 Beta vulgaris
Eucgr.G01699 Eucalyptus grandis
FAN15G3707 Fragaria x ananassa
FAN20G2962 Fragaria x ananassa
FAN24G0421 Fragaria x ananassa
FAN24G3142 Fragaria x ananassa
FAN27G0594 Fragaria x ananassa
FvH4_2g09750 Fragaria vesca
Glyma.12G236000 Glycine max
Glyma.13G201500 Glycine max
Gohir.A03G197000 Gossypium hirsutum
Gohir.A12G042300 Gossypium hirsutum
Gohir.D02G218400 Gossypium hirsutum
Gohir.D12G030000 Gossypium hirsutum
Gorai.005G246300 Gossypium raimondii
Gorai.008G030900 Gossypium raimondii
GSVIVG01023831001 Vitis vinifera
HanXRQChr16g0505381 Helianthus annuus
Haze_02323 Corylus avellana
Hma1.2p1_0066F.1_g036090 Hydrangea macrophylla
Hma1.2p1_0851F.1_g228380 Hydrangea macrophylla
Hma1.2p1_2529F.1_g323970 Hydrangea macrophylla
HPP92_011807 Vanilla planifolia
HPP92_011808 Vanilla planifolia
Hund06250 Selenicereus undatus
Lalb_Chr01g0007991 Lupinus albus
Lalb_Chr03g0032931 Lupinus albus
Lalb_Chr19g0132281 Lupinus albus
Lj3g0018181 Lotus japonicus
Lj9C377G29 Lonicera japonica
Lsat_1_v5_gn_7_91601 Lactuca sativa
Manes.04G086600 Manihot esculenta
Manes.04G086800 Manihot esculenta
Mapoly0015s0126 Marchantia polymorpha
MBI11_g32384_MAGBIO Magnolia biondii
MCO12G085 Micromonas commoda
MD05G1060400 Malus domestica
MD10G1068200 Malus domestica
Medtr8g037355 Medicago truncatula
MELO3C023325.2 Cucumis melo
Migut.B00206 Erythranthe guttata
MSTRG.16828 Avicennia marina
Nitab4.5_0003234g0050 Nicotiana tabacum
Nitab4.5_0005796g0010 Nicotiana tabacum
Nn7g37293 Nelumbo nucifera
Oeu041617.2 Olea europaea
Oeu061228.2 Olea europaea
Os07g0586500 Oryza sativa ssp. japonica
Peaxi162Scf00016g00424 Petunia axillaris
PGR042G0537 Punica granatum
PGSC0003DMG400030951 Solanum tuberosum
Phvul.011G210500 Phaseolus vulgaris
Potri.004G158900 Populus trichocarpa
Potri.009G120200 Populus trichocarpa
Pp3c16_16590 Physcomitrium patens
Pp3c27_1900 Physcomitrium patens
PRCOL_00001340 Prasinoderma coloniale
Prupe.8G090100 Prunus persica
Psat3g183600 Pisum sativum
Psat4g019480 Pisum sativum
Psat4g193920 Pisum sativum
Psat5g155520 Pisum sativum
Psat7g202400 Pisum sativum
PSO731G0114 Papaver somniferum
PSO764G0293 Papaver somniferum
QL06p027155 Quercus lobata
QL11p045146 Quercus lobata
QL11p045270 Quercus lobata
RcHm_v2.0_Chr6g0266041 Rosa chinensis
Rhsim11G0180700 Rhododendron simsii
Sabra04G0106100 Salix brachista
Sabra09G0092500 Salix brachista
Sc18g0005150 Simmondsia chinensis
Sed0003378 Sechium edule
Sed0019695 Sechium edule
SEGI_30924 Sequoiadendron giganteum
SEGI_41424 Sequoiadendron giganteum
SGA_v2.0_scaffold58G20499 Striga asiatica
SHI05567 Sapria himalayana
SMO365G0074 Selaginella moellendorffii
Solyc01g109960.3 Solanum lycopersicum
Sopen01g052150 Solanum pennellii
Sp4g00630 Schrenkiella parvula
TAR376G0887 Trochodendron aralioides
TAR381G1154 Trochodendron aralioides
TAR625G1297 Trochodendron aralioides
THA.LOC104807752 Tarenaya hassleriana
Thecc.02G080000 Theobroma cacao
Thhalv10000089m.g Eutrema salsugineum
TPR.G15334 Trifolium pratense
TPR.G1833 Trifolium pratense
TWI31G0084 Tripterygium wilfordii
TWI79G1546 Tripterygium wilfordii
unitig_0.g57 Utricularia gibba
unitig_0.g58 Utricularia gibba
unitig_21.g20793 Utricularia gibba
vmacro02077 Vaccinium macrocarpon
VMungo1127G0950 Vigna mungo
Zm00001eb108060 Zea mays
Zm00001eb325940 Zea mays

User provided reference genes

Program Settings