Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p03080 Brassica napus
Aa31LG2G1780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis
Actinidia33017 Actinidia chinensis
Actinidia33018 Actinidia chinensis
Actinidia35905 Actinidia chinensis
Ah.13g074370 Amaranthus hybridus
AL4G41050 Arabidopsis lyrata
Aqoxy5G04052 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea
AT1G54380 Arabidopsis thaliana
AT2G42510 Arabidopsis thaliana
ATR0743G139 Amborella trichopoda
Atru.chr3.1596 Acer truncatum
Atru.chr5.2612 Acer truncatum
AUR62002610 Chenopodium quinoa
AUR62030033 Chenopodium quinoa
BcaB01g03452 Brassica carinata
BcaB04g18443 Brassica carinata
BcaB06g29252 Brassica carinata
BcaC01g05279 Brassica carinata
BcaC02g07234 Brassica carinata
BcaC02g12437 Brassica carinata
BcaNung00544 Brassica carinata
BcaNung03232 Brassica carinata
BcaNung05216 Brassica carinata
BolC3t15196H Brassica oleracea
BolC4t22005H Brassica oleracea
BolC4t28477H Brassica oleracea
BraA05t19299Z Brassica rapa
C03p28230 Brassica napus
C04p03710 Brassica napus
C04p69770 Brassica napus
CAN.G710.65 Capsicum annuum
CANSAT01G2758 Cannabis sativa
CANSAT11G1749 Cannabis sativa
CANSAT78G0609 Cannabis sativa
CARHR055450 Cardamine hirsuta
CARHR137580 Cardamine hirsuta
CARHR137590 Cardamine hirsuta
Carub.0004s2496 Capsella rubella
Ca_11399_v3 Cicer arietinum L.
Ca_11402_v3 Cicer arietinum L.
Ca_29593_v3 Cicer arietinum L.
CBR_g48670 Chara braunii
Cc03_g13030 Coffea canephora
CDE02G0781 Ceratophyllum demersum
CDE09G0340 Ceratophyllum demersum
Cfa015780 Carpinus fangiana
Ciclev10019191m.g Citrus clementina
CiPaw.01G102900 Carya illinoinensis
ClCG07G015850 Citrullus lanatus
COL.COLO4_24387 Corchorus olitorius
Cpa.g.sc1876.1 Carica papaya
Cpa.g.sc2527.2 Carica papaya
Cpa.g.sc73.18 Carica papaya
Cre09.g405650 Chlamydomonas reinhardtii
CsaV3_4G003570 Cucumis sativus L.
CSS0021437 Camellia sinensis var. sinensis
DCAR_005511 Daucus carota
DCAR_028443 Daucus carota
Dinv22688 Davidia involucrata
Dinv44218 Davidia involucrata
Duzib151G0942 Durio zibethinus
Duzib268G0197 Durio zibethinus
EL10Ac3g06308 Beta vulgaris
Eucgr.A00251 Eucalyptus grandis
FAN07G0445 Fragaria x ananassa
FAN17G0085 Fragaria x ananassa
FAN22G0235 Fragaria x ananassa
FvH4_4g11290 Fragaria vesca
Glyma.10G295800 Glycine max
Glyma.20G245800 Glycine max
Gohir.A10G134400 Gossypium hirsutum
Gohir.D10G132100 Gossypium hirsutum
Gorai.011G145800 Gossypium raimondii
GSVIVG01013563001 Vitis vinifera
HanXRQChr07g0186701 Helianthus annuus
Haze_00714 Corylus avellana
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla
HPP92_009171 Vanilla planifolia
Hund12225 Selenicereus undatus
Lalb_Chr02g0144301 Lupinus albus
Lalb_Chr02g0144311 Lupinus albus
Lalb_Chr21g0307601 Lupinus albus
Lj5g0018220 Lotus japonicus
Lj6A60T46 Lonicera japonica
Lj6A60T47 Lonicera japonica
Lsat_1_v5_gn_6_54900 Lactuca sativa
Manes.11G116001 Manihot esculenta
Mapoly0064s0042 Marchantia polymorpha
MBI08_g33649_MAGBIO Magnolia biondii
MCO03G002 Micromonas commoda
MD04G1038300 Malus domestica
MD04G1038400 Malus domestica
MD13G1258700 Malus domestica
Medtr1g116530 Medicago truncatula
Medtr6g086905 Medicago truncatula
MELO3C017696.2 Cucumis melo
Migut.G01038 Erythranthe guttata
Migut.N03111 Erythranthe guttata
MSTRG.20570 Avicennia marina
MSTRG.21993 Avicennia marina
Nitab4.5_0000526g0040 Nicotiana tabacum
Nitab4.5_0001049g0080 Nicotiana tabacum
Nitab4.5_0004962g0030 Nicotiana tabacum
Nitab4.5_0006710g0020 Nicotiana tabacum
Nn2g11494 Nelumbo nucifera
Oeu007717.1 Olea europaea
Oeu050349.1 Olea europaea
Os11g0293300 Oryza sativa ssp. japonica
Peaxi162Scf00319g00915 Petunia axillaris
PGR083G0820 Punica granatum
PGSC0003DMG400021611 Solanum tuberosum
Phvul.007G004100 Phaseolus vulgaris
Potri.007G124150 Populus trichocarpa
Potri.017G036200 Populus trichocarpa
Pp3c18_5230 Physcomitrium patens
PRCOL_00004343 Prasinoderma coloniale
Prupe.1G188800 Prunus persica
Prupe.1G189100 Prunus persica
Psat6g241440 Pisum sativum
PSO017G7323 Papaver somniferum
PSO675G5961 Papaver somniferum
QL10p045440 Quercus lobata
RcHm_v2.0_Chr4g0407521 Rosa chinensis
RcHm_v2.0_Chr4g0407531 Rosa chinensis
Rhsim09G0031800 Rhododendron simsii
Sabra07G0100500 Salix brachista
Sabra17G0023400 Salix brachista
Sabra17G0023900 Salix brachista
SalBow3G3821 Salvia bowleyana
SalBow6G5966 Salvia bowleyana
Sc19g0002150 Simmondsia chinensis
Sed0012126 Sechium edule
SEGI_08315 Sequoiadendron giganteum
SEGI_09077 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06156 Striga asiatica
SHI06503 Sapria himalayana
SHI06506 Sapria himalayana
SMO174G0256 Selaginella moellendorffii
SMO273G0052 Selaginella moellendorffii
SMO351G0426 Selaginella moellendorffii
Solyc09g098560.2 Solanum lycopersicum
Sopen09g036480 Solanum pennellii
Sp4g24640 Schrenkiella parvula
Sp6g02310 Schrenkiella parvula
TAR374G0043 Trochodendron aralioides
TAR375G1135 Trochodendron aralioides
THA.LOC104798849 Tarenaya hassleriana
THA.LOC104821356 Tarenaya hassleriana
Thecc.04G184200 Theobroma cacao
Thhalv10016741m.g Eutrema salsugineum
Thhalv10017985m.g Eutrema salsugineum
TPR.G1006 Trifolium pratense
TPR.G10413 Trifolium pratense
TWI34G1341 Tripterygium wilfordii
TWI60G0507 Tripterygium wilfordii
TWI60G1520 Tripterygium wilfordii
unitig_8.g3035 Utricularia gibba
vmacro00589 Vaccinium macrocarpon
vmacro00590 Vaccinium macrocarpon
VMungo0720G0448 Vigna mungo
Zm00001eb248350 Zea mays

User provided reference genes

Program Settings