Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35420 Brassica napus
A05p40460 Brassica napus
Aa31LG5G18330 Aethionema arabicum
Actinidia07885 Actinidia chinensis
Actinidia09779 Actinidia chinensis
Actinidia21445 Actinidia chinensis
Ah.01g002230 Amaranthus hybridus
AL3G19120 Arabidopsis lyrata
Aqoxy1G04225 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea
AT3G07760 Arabidopsis thaliana
ATR1149G091 Amborella trichopoda
Atru.chr6.3369 Acer truncatum
AUR62015060 Chenopodium quinoa
AUR62017517 Chenopodium quinoa
BcaB01g01337 Brassica carinata
BcaB03g14683 Brassica carinata
BcaB03g16127 Brassica carinata
BcaB04g17145 Brassica carinata
BcaB04g21271 Brassica carinata
BcaC05g29569 Brassica carinata
BcaC09g47944 Brassica carinata
BolC1t05535H Brassica oleracea
BolC3t16573H Brassica oleracea
BolC5t34611H Brassica oleracea
BraA01t04365Z Brassica rapa
BraA03t12719Z Brassica rapa
BraA05t22779Z Brassica rapa
C03p43050 Brassica napus
C05p59560 Brassica napus
CAN.G294.16 Capsicum annuum
CAN.G854.8 Capsicum annuum
CANSAT64G1042 Cannabis sativa
CARHR082470 Cardamine hirsuta
Carub.0003s0734 Capsella rubella
Cc00_g07360 Coffea canephora
CDE04G0517 Ceratophyllum demersum
CDE07G1815 Ceratophyllum demersum
Ciclev10017178m.g Citrus clementina
CiPaw.03G279300 Carya illinoinensis
CiPaw.04G196300 Carya illinoinensis
ClCG02G009350 Citrullus lanatus
Cpa.g.c46948 Carica papaya
CsaV3_6G009500 Cucumis sativus L.
CSS0022075 Camellia sinensis var. sinensis
CSS0024587 Camellia sinensis var. sinensis
CSS0042456 Camellia sinensis var. sinensis
DCAR_012907 Daucus carota
DCAR_019709 Daucus carota
DCAR_021105 Daucus carota
Dinv05830 Davidia involucrata
Dinv07865 Davidia involucrata
Dinv21270 Davidia involucrata
Duzib133G1241 Durio zibethinus
Duzib138G0739 Durio zibethinus
Duzib138G1664 Durio zibethinus
Eucgr.A01049 Eucalyptus grandis
Eucgr.K00654 Eucalyptus grandis
FAN02G3860 Fragaria x ananassa
FAN04G0826 Fragaria x ananassa
FAN04G0834 Fragaria x ananassa
FAN05G0096 Fragaria x ananassa
FAN08G1359 Fragaria x ananassa
FAN09G2975 Fragaria x ananassa
FAN13G0518 Fragaria x ananassa
FAN14G5814 Fragaria x ananassa
FAN18G2534 Fragaria x ananassa
FvH4_5g30980 Fragaria vesca
FvH4_6g40920 Fragaria vesca
Glyma.02G305100 Glycine max
Glyma.14G008300 Glycine max
Gohir.A07G087600 Gossypium hirsutum
Gohir.A07G170000 Gossypium hirsutum
Gohir.A11G149700 Gossypium hirsutum
Gohir.D07G092500 Gossypium hirsutum
Gohir.D07G171200 Gossypium hirsutum
Gohir.D11G156380 Gossypium hirsutum
Gorai.001G099100 Gossypium raimondii
Gorai.001G191600 Gossypium raimondii
Gorai.007G166800 Gossypium raimondii
GSVIVG01030050001 Vitis vinifera
HanXRQChr03g0075261 Helianthus annuus
HanXRQChr10g0306431 Helianthus annuus
Haze_12682 Corylus avellana
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla
HPP92_009568 Vanilla planifolia
Hund21536 Selenicereus undatus
Lalb_Chr04g0247321 Lupinus albus
Lalb_Chr04g0247511 Lupinus albus
Lalb_Chr10g0107601 Lupinus albus
LjContig00081g0006376 Lotus japonicus
Lsat_1_v5_gn_9_104560 Lactuca sativa
Manes.12G061000 Manihot esculenta
Manes.13G062800 Manihot esculenta
MBI16_g26392_MAGBIO Magnolia biondii
MD09G1123200 Malus domestica
MD17G1113700 Malus domestica
Medtr5g097240 Medicago truncatula
MELO3C025975.2 Cucumis melo
Migut.M00031 Erythranthe guttata
MSTRG.12237 Avicennia marina
MSTRG.14924 Avicennia marina
MSTRG.6645 Avicennia marina
Nitab4.5_0000441g0110 Nicotiana tabacum
Nitab4.5_0001229g0110 Nicotiana tabacum
Nitab4.5_0004642g0020 Nicotiana tabacum
Nitab4.5_0005511g0040 Nicotiana tabacum
Nn1g03242 Nelumbo nucifera
Nn1g07447 Nelumbo nucifera
Oeu040468.1 Olea europaea
Oeu063643.1 Olea europaea
Os12g0514600 Oryza sativa ssp. japonica
Peaxi162Scf00047g02135 Petunia axillaris
PGR042G2803 Punica granatum
PGR142G2829 Punica granatum
PGSC0003DMG400006152 Solanum tuberosum
PGSC0003DMG400014366 Solanum tuberosum
PGSC0003DMG400028823 Solanum tuberosum
Phvul.008G284800 Phaseolus vulgaris
Potri.014G165300 Populus trichocarpa
Prupe.3G200700 Prunus persica
Psat2g004600 Pisum sativum
PSO210G6619 Papaver somniferum
PSO302G0206 Papaver somniferum
QL08p028475 Quercus lobata
RcHm_v2.0_Chr2g0156501 Rosa chinensis
RcHm_v2.0_Chr7g0226381 Rosa chinensis
Rhsim04G0038800 Rhododendron simsii
Sabra14G0125900 Salix brachista
SalBow7G0104 Salvia bowleyana
Sc20g0003970 Simmondsia chinensis
Sed0000663 Sechium edule
Sed0023039 Sechium edule
SEGI_10863 Sequoiadendron giganteum
SEGI_33416 Sequoiadendron giganteum
SGA_v2.0_scaffold181G39677 Striga asiatica
SGA_v2.0_scaffold73G24513 Striga asiatica
SHI10146 Sapria himalayana
SMO147G0193 Selaginella moellendorffii
Solyc07g047890.4 Solanum lycopersicum
Solyc12g006160.2 Solanum lycopersicum
Sopen07g024320 Solanum pennellii
Sopen12g002110 Solanum pennellii
Sp3g06690 Schrenkiella parvula
TAR624G0596 Trochodendron aralioides
TAR624G1210 Trochodendron aralioides
TAR627G0777 Trochodendron aralioides
THA.LOC104819042 Tarenaya hassleriana
THA.LOC104826653 Tarenaya hassleriana
THA.LOC109116190 Tarenaya hassleriana
Thecc.01G191600 Theobroma cacao
Thhalv10021767m.g Eutrema salsugineum
TPR.G1269 Trifolium pratense
TWI18G0278 Tripterygium wilfordii
TWI36G1037 Tripterygium wilfordii
TWI75G1244 Tripterygium wilfordii
unitig_37.g12596 Utricularia gibba
unitig_46.g18340 Utricularia gibba
vmacro09397 Vaccinium macrocarpon
vmacro12102 Vaccinium macrocarpon
VMungo0647G2439 Vigna mungo
Zm00001eb137890 Zea mays
Zm00001eb166190 Zea mays
Zm00001eb264410 Zea mays

User provided reference genes

Program Settings