Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p40190 Brassica napus
A03p38190 Brassica napus
A05p36120 Brassica napus
Aa31LG10G690 Aethionema arabicum
Aa31LG8G620 Aethionema arabicum
Actinidia00920 Actinidia chinensis
Actinidia16226 Actinidia chinensis
Ah.10g037910 Amaranthus hybridus
AL1G23250 Arabidopsis lyrata
AL1G63580 Arabidopsis lyrata
AL3G25280 Arabidopsis lyrata
AL5G32130 Arabidopsis lyrata
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea
AT1G55546 Arabidopsis thaliana
AT3G13410 Arabidopsis thaliana
ATR0068G043 Amborella trichopoda
Atru.chr3.2054 Acer truncatum
AUR62023204 Chenopodium quinoa
AUR62023250 Chenopodium quinoa
BcaB04g18758 Brassica carinata
BcaB04g21013 Brassica carinata
BcaC01g03994 Brassica carinata
BcaC05g29181 Brassica carinata
BcaC09g48307 Brassica carinata
BolC1t05112H Brassica oleracea
BolC3t16904H Brassica oleracea
BolC5t34116H Brassica oleracea
BraA01t04057Z Brassica rapa
BraA03t12972Z Brassica rapa
BraA05t22418Z Brassica rapa
C01p51680 Brassica napus
C03p46350 Brassica napus
C05p54490 Brassica napus
CAN.G40.2 Capsicum annuum
CANSAT35G0440 Cannabis sativa
CANSAT54G1622 Cannabis sativa
CARHR045240 Cardamine hirsuta
CARHR088020 Cardamine hirsuta
Carub.0001s4406 Capsella rubella
Carub.0003s1278 Capsella rubella
Ca_18976_v3 Cicer arietinum L.
Ca_30870_v3 Cicer arietinum L.
CBR_g26202 Chara braunii
Cc03_g11060 Coffea canephora
CDE02G0988 Ceratophyllum demersum
CDE11G0372 Ceratophyllum demersum
Cfa009526 Carpinus fangiana
Ciclev10015980m.g Citrus clementina
CiPaw.13G179700 Carya illinoinensis
ClCG08G007290 Citrullus lanatus
ClCG10G005160 Citrullus lanatus
COL.COLO4_35065 Corchorus olitorius
Cpa.g.sc119.11 Carica papaya
Cre09.g392616 Chlamydomonas reinhardtii
CsaV3_6G004960 Cucumis sativus L.
CSS0032898 Camellia sinensis var. sinensis
CSS0042366 Camellia sinensis var. sinensis
DCAR_019963 Daucus carota
Dinv31991 Davidia involucrata
Duzib150G1501 Durio zibethinus
Duzib168G1574 Durio zibethinus
ECA234G4359 Erigeron canadensis
EL10Ac2g04496 Beta vulgaris
Eucgr.J01724 Eucalyptus grandis
FAN02G4318 Fragaria x ananassa
FAN11G3171 Fragaria x ananassa
FAN16G3749 Fragaria x ananassa
FAN17G1476 Fragaria x ananassa
FAN20G0894 Fragaria x ananassa
FAN21G2148 Fragaria x ananassa
FAN25G0045 Fragaria x ananassa
FvH4_3g45990 Fragaria vesca
Glyma.03G121400 Glycine max
Glyma.11G094000 Glycine max
Glyma.12G020500 Glycine max
Gohir.A08G014000 Gossypium hirsutum
Gohir.D08G020600 Gossypium hirsutum
Gorai.004G019900 Gossypium raimondii
GSVIVG01025511001 Vitis vinifera
HanXRQChr03g0088211 Helianthus annuus
Haze_22917 Corylus avellana
HPP92_021175 Vanilla planifolia
Hund16197 Selenicereus undatus
Lalb_Chr01g0001071 Lupinus albus
Lalb_Chr19g0139761 Lupinus albus
Lj1A554T14 Lonicera japonica
Lj3g0008656 Lotus japonicus
Lsat_1_v5_gn_4_42220 Lactuca sativa
Manes.03G085800 Manihot esculenta
Manes.15G111100 Manihot esculenta
Mapoly0001s0434 Marchantia polymorpha
MBI19_g24076_MAGBIO Magnolia biondii
MD03G1001400 Malus domestica
MD11G1000600 Malus domestica
Medtr1g055145 Medicago truncatula
Medtr1g055160 Medicago truncatula
Medtr4g076880 Medicago truncatula
MELO3C019973.2 Cucumis melo
Migut.D02580 Erythranthe guttata
MSTRG.18890 Avicennia marina
MSTRG.20930 Avicennia marina
Nitab4.5_0000075g0150 Nicotiana tabacum
Nitab4.5_0000890g0150 Nicotiana tabacum
Nn2g15910 Nelumbo nucifera
Nn7g35788 Nelumbo nucifera
Os11g0127700 Oryza sativa ssp. japonica
Os12g0123900 Oryza sativa ssp. japonica
Peaxi162Scf00186g01713 Petunia axillaris
PGR119G1781 Punica granatum
PGSC0003DMG400021083 Solanum tuberosum
PGSC0003DMG400031504 Solanum tuberosum
Phvul.011G023200 Phaseolus vulgaris
Potri.001G000900 Populus trichocarpa
Potri.003G223601 Populus trichocarpa
Potri.008G223987 Populus trichocarpa
Potri.012G124888 Populus trichocarpa
Pp3c14_9560 Physcomitrium patens
Pp3c1_26860 Physcomitrium patens
Prupe.6G000900 Prunus persica
Psat7g172560 Pisum sativum
PSO339G2659 Papaver somniferum
PSO384G2337 Papaver somniferum
QL01p007808 Quercus lobata
RcHm_v2.0_Chr4g0398051 Rosa chinensis
RcHm_v2.0_Chr5g0084101 Rosa chinensis
RcHm_v2.0_Chr7g0192441 Rosa chinensis
Rhsim09G0130300 Rhododendron simsii
Sabra01G0000800 Salix brachista
Sabra02G0167600 Salix brachista
Sabra03G0048200 Salix brachista
SalBow2G2450 Salvia bowleyana
Sc14g0004840 Simmondsia chinensis
Sed0000768 Sechium edule
Sed0018013 Sechium edule
SEGI_28087 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01707 Striga asiatica
SGA_v2.0_scaffold6G03345 Striga asiatica
SMO134G0100 Selaginella moellendorffii
Solyc01g049890.3 Solanum lycopersicum
Sopen01g018940 Solanum pennellii
Sp1g41170 Schrenkiella parvula
Sp3g11600 Schrenkiella parvula
TAR369G0454 Trochodendron aralioides
TAR623G1572 Trochodendron aralioides
THA.LOC104816065 Tarenaya hassleriana
THA.LOC104822689 Tarenaya hassleriana
Thecc.09G206000 Theobroma cacao
Thhalv10011977m.g Eutrema salsugineum
Thhalv10021153m.g Eutrema salsugineum
TPR.G3681 Trifolium pratense
TWI32G0643 Tripterygium wilfordii
TWI34G2030 Tripterygium wilfordii
TWI36G1534 Tripterygium wilfordii
unitig_22.g5956 Utricularia gibba
vmacro04045 Vaccinium macrocarpon
VMungo1127G0835 Vigna mungo
Zm00001eb043250 Zea mays
Zm00001eb080660 Zea mays
Zm00001eb093640 Zea mays
Zm00001eb132370 Zea mays
Zm00001eb195780 Zea mays
Zm00001eb363780 Zea mays
Zm00001eb387380 Zea mays
Zm00001eb408990 Zea mays

User provided reference genes

Program Settings