Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p14410 Brassica napus
Aa31LG9G640 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis
Actinidia02008 Actinidia chinensis
Actinidia14560 Actinidia chinensis
Ah.12g054620 Amaranthus hybridus
AL7G48180 Arabidopsis lyrata
Aqoxy3G00118 Aquilegia oxysepala
Aqoxy3G03757 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TSYD5C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZI9W5R Arachis hypogaea
AT5G41270 Arabidopsis thaliana
ATR0680G137 Amborella trichopoda
ATR0680G148 Amborella trichopoda
Atru.chr9.2192 Acer truncatum
AUR62007249 Chenopodium quinoa
AUR62018749 Chenopodium quinoa
BcaB06g27609 Brassica carinata
BcaC02g08973 Brassica carinata
BolC4t26425H Brassica oleracea
BraA04t17088Z Brassica rapa
C04p48320 Brassica napus
CAN.G1069.19 Capsicum annuum
CAN.G774.35 Capsicum annuum
CAN.G774.36 Capsicum annuum
CARHR213060 Cardamine hirsuta
Carub.0001s0729 Capsella rubella
Carub.0007s3425 Capsella rubella
Cc10_g03910 Coffea canephora
CDE01G0178 Ceratophyllum demersum
CDE04G2006 Ceratophyllum demersum
Cfa013198 Carpinus fangiana
Cfa014102 Carpinus fangiana
Ciclev10002111m.g Citrus clementina
CiPaw.08G074700 Carya illinoinensis
ClCG07G008080 Citrullus lanatus
Cpa.g.sc39.98 Carica papaya
Cpa.g.sc39.99 Carica papaya
Cpa.g.sc45.44 Carica papaya
CsaV3_4G005960 Cucumis sativus L.
CSS0003782 Camellia sinensis var. sinensis
CSS0027171 Camellia sinensis var. sinensis
CSS0028138 Camellia sinensis var. sinensis
CSS0030285 Camellia sinensis var. sinensis
CSS0037206 Camellia sinensis var. sinensis
DCAR_000614 Daucus carota
Dinv38945 Davidia involucrata
Duzib068G1191 Durio zibethinus
ECA240G3612 Erigeron canadensis
EL10Ac8g19045 Beta vulgaris
Eucgr.D01846 Eucalyptus grandis
FAN04G1575 Fragaria x ananassa
FAN07G0122 Fragaria x ananassa
FAN07G0166 Fragaria x ananassa
FAN08G1593 Fragaria x ananassa
FAN12G1413 Fragaria x ananassa
FAN12G3540 Fragaria x ananassa
FAN13G2230 Fragaria x ananassa
FAN17G1800 Fragaria x ananassa
FAN18G3255 Fragaria x ananassa
FvH4_4g24221 Fragaria vesca
FvH4_4g36830 Fragaria vesca
FvH4_5g02380 Fragaria vesca
Glyma.01G220000 Glycine max
Glyma.20G061500 Glycine max
Gohir.A05G299133 Gossypium hirsutum
Gohir.D05G298900 Gossypium hirsutum
Gorai.009G316100 Gossypium raimondii
HanXRQChr03g0086721 Helianthus annuus
HanXRQChr03g0086731 Helianthus annuus
Haze_21601 Corylus avellana
Haze_22818 Corylus avellana
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla
HPP92_021782 Vanilla planifolia
Hund05589 Selenicereus undatus
Hund17074 Selenicereus undatus
Lalb_Chr09g0320981 Lupinus albus
Lalb_Chr20g0109121 Lupinus albus
Lj2A555T5 Lonicera japonica
Lj8A231T11 Lonicera japonica
Lj8C228T3 Lonicera japonica
LjContig00312_ERROPOS870357g0005117 Lotus japonicus
Lsat_1_v5_gn_5_92680 Lactuca sativa
Lsat_1_v5_gn_6_87401 Lactuca sativa
Manes.01G061800 Manihot esculenta
Mapoly0057s0052 Marchantia polymorpha
Mapoly0057s0058 Marchantia polymorpha
MBI18_g42175_MAGBIO Magnolia biondii
MD07G1059600 Malus domestica
MD14G1104200 Malus domestica
Medtr0768s0010 Medicago truncatula
Medtr6g011320 Medicago truncatula
MELO3C016352.2 Cucumis melo
Migut.A00767 Erythranthe guttata
MSTRG.11985 Avicennia marina
MSTRG.11987 Avicennia marina
Nitab4.5_0001315g0090 Nicotiana tabacum
Nitab4.5_0001615g0200 Nicotiana tabacum
Nitab4.5_0003441g0080 Nicotiana tabacum
Nitab4.5_0011683g0020 Nicotiana tabacum
Nn1g01503 Nelumbo nucifera
Oeu009155.1 Olea europaea
Oeu009158.1 Olea europaea
Oeu020615.1 Olea europaea
Os01g0531000 Oryza sativa ssp. japonica
Os01g0541600 Oryza sativa ssp. japonica
Peaxi162Scf00014g00082 Petunia axillaris
Peaxi162Scf00119g00828 Petunia axillaris
PGR031G2604 Punica granatum
PGSC0003DMG400012342 Solanum tuberosum
PGSC0003DMG401005999 Solanum tuberosum
PGSC0003DMG402005999 Solanum tuberosum
PGSC0003DMG403005999 Solanum tuberosum
Phvul.002G157700 Phaseolus vulgaris
Phvul.005G126900 Phaseolus vulgaris
Potri.003G127200 Populus trichocarpa
Pp3c22_14200 Physcomitrium patens
Prupe.5G099900 Prunus persica
Psat1g061240 Pisum sativum
Psat7g254600 Pisum sativum
PSO210G3801 Papaver somniferum
PSO210G3847 Papaver somniferum
PSO478G0046 Papaver somniferum
PSO782G5383 Papaver somniferum
QL05p087372 Quercus lobata
QL12p012797 Quercus lobata
RcHm_v2.0_Chr7g0197731 Rosa chinensis
Rhsim02G0230400 Rhododendron simsii
Rhsim02G0230900 Rhododendron simsii
Rhsim02G0231000 Rhododendron simsii
Sabra01G0078900 Salix brachista
Sabra01G0079000 Salix brachista
SalBow1G8718 Salvia bowleyana
SalBow7G4152 Salvia bowleyana
Sc01g0009550 Simmondsia chinensis
Sed0002821 Sechium edule
Sed0022715 Sechium edule
SEGI_21744 Sequoiadendron giganteum
SGA_v2.0_scaffold96G28938 Striga asiatica
SHI24854 Sapria himalayana
SMO367G0349 Selaginella moellendorffii
Solyc04g007420.4 Solanum lycopersicum
Solyc08g081040.3 Solanum lycopersicum
Sopen04g002480 Solanum pennellii
Sopen08g029360 Solanum pennellii
Sp7g00660 Schrenkiella parvula
SpUn0010_0140 Schrenkiella parvula
TAR268G0002 Trochodendron aralioides
TAR375G1065 Trochodendron aralioides
THA.LOC104809392 Tarenaya hassleriana
Thecc.03G278500 Theobroma cacao
Thhalv10027895m.g Eutrema salsugineum
Thhalv10028247m.g Eutrema salsugineum
TPR.G3981 Trifolium pratense
TPR.G4254 Trifolium pratense
TWI18G1338 Tripterygium wilfordii
TWI36G1592 Tripterygium wilfordii
unitig_32.g11599 Utricularia gibba
VMungo1080G1277 Vigna mungo
Zm00001eb162950 Zea mays

User provided reference genes

Program Settings