Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p20040 Brassica napus
A05p28640 Brassica napus
Aa31LG8G7090 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2808 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis
Actinidia10753 Actinidia chinensis
Actinidia37372 Actinidia chinensis
Actinidia37373 Actinidia chinensis
Ah.06g182200 Amaranthus hybridus
AL1G58280 Arabidopsis lyrata
AL3G34000 Arabidopsis lyrata
Aqoxy1G04109 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea
AT1G50620 Arabidopsis thaliana
AT3G20280 Arabidopsis thaliana
ATR0561G279 Amborella trichopoda
Atru.chr2.3536 Acer truncatum
Atru.chr2.3555 Acer truncatum
Atru.chr9.507 Acer truncatum
AUR62015886 Chenopodium quinoa
AUR62020337 Chenopodium quinoa
BcaB02g11165 Brassica carinata
BcaB05g24188 Brassica carinata
BcaB06g28413 Brassica carinata
BcaB07g30913 Brassica carinata
BcaB07g30968 Brassica carinata
BcaB07g33496 Brassica carinata
BcaC05g27404 Brassica carinata
BolC5t32077H Brassica oleracea
BolC5t33127H Brassica oleracea
BraA05t20910Z Brassica rapa
BraA05t21740Z Brassica rapa
C05p33520 Brassica napus
C05p44040 Brassica napus
CAN.G337.52 Capsicum annuum
CAN.G791.3 Capsicum annuum
CANSAT11G1231 Cannabis sativa
CARHR040590 Cardamine hirsuta
CARHR040670 Cardamine hirsuta
CARHR095900 Cardamine hirsuta
Carub.0001s3966 Capsella rubella
Carub.0003s2023 Capsella rubella
Ca_06350_v3 Cicer arietinum L.
Cc05_g14350 Coffea canephora
CDE04G3193 Ceratophyllum demersum
CDE06G2452 Ceratophyllum demersum
Cfa020273 Carpinus fangiana
Ciclev10007504m.g Citrus clementina
CiPaw.11G195000 Carya illinoinensis
CiPaw.11G195100 Carya illinoinensis
CiPaw.12G133900 Carya illinoinensis
ClCG10G005040 Citrullus lanatus
COL.COLO4_09741 Corchorus olitorius
Cpa.g.sc12.236 Carica papaya
Cpa.g.sc12.238 Carica papaya
CsaV3_3G004720 Cucumis sativus L.
CSS0006554 Camellia sinensis var. sinensis
CSS0022956 Camellia sinensis var. sinensis
CSS0023200 Camellia sinensis var. sinensis
DCAR_013201 Daucus carota
DCAR_022592 Daucus carota
Dinv22227 Davidia involucrata
Dinv40798 Davidia involucrata
ECA240G3846 Erigeron canadensis
ECA246G1209 Erigeron canadensis
EL10Ac4g07685 Beta vulgaris
Eucgr.F03507 Eucalyptus grandis
FAN11G1876 Fragaria x ananassa
FAN16G0173 Fragaria x ananassa
FAN21G2245 Fragaria x ananassa
FAN25G1926 Fragaria x ananassa
FvH4_3g23572 Fragaria vesca
Glyma.02G295400 Glycine max
Glyma.14G018000 Glycine max
Gohir.A08G024300 Gossypium hirsutum
Gohir.D08G034800 Gossypium hirsutum
Gorai.004G032700 Gossypium raimondii
GSVIVG01037731001 Vitis vinifera
GSVIVG01037732001 Vitis vinifera
HanXRQChr05g0159731 Helianthus annuus
HanXRQChr13g0408281 Helianthus annuus
Haze_09750 Corylus avellana
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla
HPP92_015777 Vanilla planifolia
Hund01951 Selenicereus undatus
Lalb_Chr10g0107181 Lupinus albus
Lj1A881T81 Lonicera japonica
Lj8A173T74 Lonicera japonica
LjContig00272g0028044 Lotus japonicus
Lsat_1_v5_gn_5_2601 Lactuca sativa
Manes.15G066000 Manihot esculenta
Mapoly0085s0079 Marchantia polymorpha
MBI16_g42268_MAGBIO Magnolia biondii
MD03G1193000 Malus domestica
MD11G1209200 Malus domestica
Medtr5g093940 Medicago truncatula
MELO3C014171.2 Cucumis melo
Migut.M01703 Erythranthe guttata
MSTRG.6962 Avicennia marina
Nitab4.5_0001160g0060 Nicotiana tabacum
Nitab4.5_0002338g0050 Nicotiana tabacum
Nitab4.5_0003989g0010 Nicotiana tabacum
Nitab4.5_0005221g0010 Nicotiana tabacum
Nn1g03330 Nelumbo nucifera
Nn1g05401 Nelumbo nucifera
Nn7g37915 Nelumbo nucifera
Oeu005515.1 Olea europaea
Oeu005986.1 Olea europaea
Oeu007994.1 Olea europaea
Oeu007995.1 Olea europaea
Os02g0720000 Oryza sativa ssp. japonica
Os06g0309000 Oryza sativa ssp. japonica
Peaxi162Scf00235g00827 Petunia axillaris
Peaxi162Scf00339g01131 Petunia axillaris
PGR031G2569 Punica granatum
PGSC0003DMG400012847 Solanum tuberosum
PGSC0003DMG402022202 Solanum tuberosum
Phvul.008G272900 Phaseolus vulgaris
Potri.001G358900 Populus trichocarpa
Pp3c10_22120 Physcomitrium patens
Pp3c20_14020 Physcomitrium patens
Pp3c24_16720 Physcomitrium patens
Prupe.4G224000 Prunus persica
Psat0s5g0040 Pisum sativum
Psat0s5g0080 Pisum sativum
Psat2g010080 Pisum sativum
PSO210G3166 Papaver somniferum
PSO210G5678 Papaver somniferum
PSO302G0053 Papaver somniferum
PSO302G0213 Papaver somniferum
QL08p007634 Quercus lobata
RcHm_v2.0_Chr5g0041571 Rosa chinensis
Rhsim04G0016300 Rhododendron simsii
Sabra16G0236700 Salix brachista
Sc16g0005710 Simmondsia chinensis
Sed0002209 Sechium edule
SEGI_01734 Sequoiadendron giganteum
SEGI_19418 Sequoiadendron giganteum
SGA_v2.0_scaffold168G38508 Striga asiatica
SHI26565 Sapria himalayana
SMO356G0590 Selaginella moellendorffii
Solyc07g065000.3 Solanum lycopersicum
Solyc12g014540.2 Solanum lycopersicum
Sopen07g033210 Solanum pennellii
Sopen12g007410 Solanum pennellii
Sp1g37440 Schrenkiella parvula
Sp3g18310 Schrenkiella parvula
TAR362G0197 Trochodendron aralioides
TAR626G0993 Trochodendron aralioides
TAR629G3495 Trochodendron aralioides
TAR724G0001 Trochodendron aralioides
THA.LOC104810240 Tarenaya hassleriana
Thecc.07G027600 Theobroma cacao
Thhalv10011311m.g Eutrema salsugineum
TPR.G18377 Trifolium pratense
TPR.G30656 Trifolium pratense
TWI38G1745 Tripterygium wilfordii
TWI39G0230 Tripterygium wilfordii
unitig_62.g23290 Utricularia gibba
vmacro09687 Vaccinium macrocarpon
VMungo0647G0514 Vigna mungo
Zm00001eb189420 Zea mays
Zm00001eb252930 Zea mays

User provided reference genes

Program Settings