Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A06p06330 Brassica napus
Aa31LG1G5340 Aethionema arabicum
Aa31LG2G11220 Aethionema arabicum
Actinidia26179 Actinidia chinensis
Actinidia38989 Actinidia chinensis
Ah.02g128340 Amaranthus hybridus
AL1G20190 Arabidopsis lyrata
AL1G67510 Arabidopsis lyrata
Aqoxy5G00854 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.291MDK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2Z03QX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M3EZX1 Arachis hypogaea
AT1G09645 Arabidopsis thaliana
AT1G57765 Arabidopsis thaliana
ATR1136G135 Amborella trichopoda
Atru.chr6.550 Acer truncatum
AUR62028456 Chenopodium quinoa
AUR62042238 Chenopodium quinoa
BcaB03g13311 Brassica carinata
BcaC07g41867 Brassica carinata
BolC5t29521H Brassica oleracea
BolC8t52471H Brassica oleracea
BraA06t23844Z Brassica rapa
C05p07700 Brassica napus
C08p13100 Brassica napus
C08p49340 Brassica napus
CARHR009620 Cardamine hirsuta
CARHR054450 Cardamine hirsuta
Carub.0001s0900 Capsella rubella
Carub.0002s0680 Capsella rubella
Cc02_g23340 Coffea canephora
Cc10_g09380 Coffea canephora
CDE08G0453 Ceratophyllum demersum
CDE08G0808 Ceratophyllum demersum
Cfa004471 Carpinus fangiana
Ciclev10003782m.g Citrus clementina
CiPaw.03G018600 Carya illinoinensis
CiPaw.04G012500 Carya illinoinensis
CiPaw.05G003600 Carya illinoinensis
ClCG08G000420 Citrullus lanatus
ClCG10G007200 Citrullus lanatus
COL.COLO4_17708 Corchorus olitorius
CsaV3_3G006510 Cucumis sativus L.
CsaV3_5G040360 Cucumis sativus L.
CSS0038337 Camellia sinensis var. sinensis
CSS0038950 Camellia sinensis var. sinensis
DCAR_001703 Daucus carota
Dinv19426 Davidia involucrata
Dinv29606 Davidia involucrata
Duzib052G0484 Durio zibethinus
Duzib248G0764 Durio zibethinus
ECA236G0617 Erigeron canadensis
EL10Ac6g14140 Beta vulgaris
Eucgr.I02780 Eucalyptus grandis
FAN04G1595 Fragaria x ananassa
FAN08G1828 Fragaria x ananassa
FAN10G0807 Fragaria x ananassa
FAN13G3078 Fragaria x ananassa
FAN18G0926 Fragaria x ananassa
FAN18G1872 Fragaria x ananassa
FvH4_5g28260 Fragaria vesca
FvH4_5g32580 Fragaria vesca
Glyma.08G237900 Glycine max
Glyma.12G165600 Glycine max
Glyma.16G002000 Glycine max
Gohir.A03G215700 Gossypium hirsutum
Gohir.A04G133900 Gossypium hirsutum
Gohir.D02G237200 Gossypium hirsutum
Gohir.D04G177000 Gossypium hirsutum
Gorai.005G265800 Gossypium raimondii
Gorai.012G169900 Gossypium raimondii
GSVIVG01023230001 Vitis vinifera
GSVIVG01025943001 Vitis vinifera
HanXRQChr03g0067991 Helianthus annuus
HanXRQChr06g0182751 Helianthus annuus
Haze_10030 Corylus avellana
HPP92_002618 Vanilla planifolia
HPP92_002677 Vanilla planifolia
Lalb_Chr15g0090801 Lupinus albus
Lalb_Chr18g0061091 Lupinus albus
Lj3g0023226 Lotus japonicus
Lj6g0019390 Lotus japonicus
Lsat_1_v5_gn_5_104580 Lactuca sativa
Lsat_1_v5_gn_7_75620 Lactuca sativa
Lsat_1_v5_gn_9_119620 Lactuca sativa
Manes.07G025900 Manihot esculenta
Manes.10G116200 Manihot esculenta
MBI06_g06694_MAGBIO Magnolia biondii
MBI17_g24966_MAGBIO Magnolia biondii
MBI18_g30384_MAGBIO Magnolia biondii
MD05G1210300 Malus domestica
MD08G1216400 Malus domestica
MD08G1244000 Malus domestica
MD15G1403500 Malus domestica
MD15G1438300 Malus domestica
Medtr4g032200 Medicago truncatula
MELO3C016488.2 Cucumis melo
MELO3C022208.2 Cucumis melo
Migut.B00750 Erythranthe guttata
Migut.C01335 Erythranthe guttata
MSTRG.20324 Avicennia marina
Nitab4.5_0000016g0420 Nicotiana tabacum
Nitab4.5_0000787g0030 Nicotiana tabacum
Nitab4.5_0005169g0070 Nicotiana tabacum
Nitab4.5_0029023g0010 Nicotiana tabacum
Nn5g27488 Nelumbo nucifera
Oeu048223.2 Olea europaea
Oeu058640.2 Olea europaea
Os05g0419600 Oryza sativa ssp. japonica
Peaxi162Scf00011g00155 Petunia axillaris
Peaxi162Scf00688g00334 Petunia axillaris
PGR042G0739 Punica granatum
PGR142G0105 Punica granatum
PGSC0003DMG400024883 Solanum tuberosum
PGSC0003DMG400025523 Solanum tuberosum
Phvul.006G220000 Phaseolus vulgaris
Phvul.011G000300 Phaseolus vulgaris
Potri.003G005400 Populus trichocarpa
Potri.004G226100 Populus trichocarpa
Potri.019G077100 Populus trichocarpa
Prupe.1G549500 Prunus persica
Prupe.1G581300 Prunus persica
Psat7g226600 Pisum sativum
PSO017G2658 Papaver somniferum
PSO170G0294 Papaver somniferum
QL02p100957 Quercus lobata
QL09p003196 Quercus lobata
QL09p004791 Quercus lobata
QL11p051756 Quercus lobata
RcHm_v2.0_Chr3g0495521 Rosa chinensis
RcHm_v2.0_Chr5g0063911 Rosa chinensis
RcHm_v2.0_Chr7g0220501 Rosa chinensis
RcHm_v2.0_Chr7g0229261 Rosa chinensis
RcHm_v2.0_Chr7g0230041 Rosa chinensis
Sabra01G0171700 Salix brachista
Sabra19G0088300 Salix brachista
SalBow6G5095 Salvia bowleyana
SalBow7G0958 Salvia bowleyana
SalBow7G1625 Salvia bowleyana
Sc16g0004250 Simmondsia chinensis
Sed0006384 Sechium edule
Sed0020386 Sechium edule
SGA_v2.0_scaffold131G34372 Striga asiatica
Sopen01g045750 Solanum pennellii
Sopen11g012540 Solanum pennellii
Sp1g08260 Schrenkiella parvula
Sp2g05730 Schrenkiella parvula
TAR381G0514 Trochodendron aralioides
TAR628G0462 Trochodendron aralioides
THA.LOC104816824 Tarenaya hassleriana
THA.LOC104820335 Tarenaya hassleriana
THA.LOC104823700 Tarenaya hassleriana
Thecc.02G016600 Theobroma cacao
Thhalv10009166m.g Eutrema salsugineum
Thhalv10023770m.g Eutrema salsugineum
TPR.G2097 Trifolium pratense
TPR.G34161 Trifolium pratense
TWI14G0848 Tripterygium wilfordii
TWI23G1156 Tripterygium wilfordii
unitig_32.g11200 Utricularia gibba
unitig_748.g7732 Utricularia gibba
vmacro19856 Vaccinium macrocarpon
VMungo0540G0867 Vigna mungo
VMungo0540G1552 Vigna mungo
Zm00001eb288300 Zea mays
Zm00001eb349170 Zea mays

User provided reference genes

Program Settings