Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p17570 Brassica napus
A06p00280 Brassica napus
Aa31LG10G1060 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis
Actinidia11301 Actinidia chinensis
Ah.04g157660 Amaranthus hybridus
Ah.04g157750 Amaranthus hybridus
AL1G63340 Arabidopsis lyrata
Aqoxy7G03617 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea
AT1G55300 Arabidopsis thaliana
ATR0681G021 Amborella trichopoda
Atru.chr1.3614 Acer truncatum
Atru.chr7.1077 Acer truncatum
AUR62015306 Chenopodium quinoa
AUR62032745 Chenopodium quinoa
BcaB02g10831 Brassica carinata
BcaC08g44186 Brassica carinata
BolC6t36098H Brassica oleracea
BolC6t36783H Brassica oleracea
BraA05t20650Z Brassica rapa
BraA06t23245Z Brassica rapa
C06p10250 Brassica napus
C06p15910 Brassica napus
CAN.G193.6 Capsicum annuum
CANSAT01G2556 Cannabis sativa
CARHR044950 Cardamine hirsuta
Carub.0001s4380 Capsella rubella
Ca_16394_v3 Cicer arietinum L.
CBR_g22380 Chara braunii
Cc00_g20490 Coffea canephora
Cc00_g23960 Coffea canephora
Cc01_g00630 Coffea canephora
Cc01_g02840 Coffea canephora
Cc05_g01230 Coffea canephora
Cfa009582 Carpinus fangiana
Cfa024345 Carpinus fangiana
Ciclev10016632m.g Citrus clementina
CiPaw.13G175600 Carya illinoinensis
CiPaw.16G086400 Carya illinoinensis
ClCG09G019650 Citrullus lanatus
COL.COLO4_35029 Corchorus olitorius
Cpa.g.sc119.63 Carica papaya
Cre01.g011200 Chlamydomonas reinhardtii
CsaV3_5G026740 Cucumis sativus L.
CSS0019544 Camellia sinensis var. sinensis
CSS0019811 Camellia sinensis var. sinensis
DCAR_009024 Daucus carota
Dinv13451 Davidia involucrata
Dinv23876 Davidia involucrata
Duzib150G0115 Durio zibethinus
Duzib170G0536 Durio zibethinus
ECA233G4188 Erigeron canadensis
ECA233G4675 Erigeron canadensis
ECA248G0362 Erigeron canadensis
EL10Ac4g09635 Beta vulgaris
Eucgr.B03612 Eucalyptus grandis
FAN11G0747 Fragaria x ananassa
FAN16G1471 Fragaria x ananassa
FAN21G3004 Fragaria x ananassa
FAN25G1542 Fragaria x ananassa
FvH4_3g45340 Fragaria vesca
Glyma.06G309800 Glycine max
Glyma.11G173655 Glycine max
Glyma.14G130400 Glycine max
Glyma.14G154000 Glycine max
Glyma.17G202802 Glycine max
Gohir.A08G011300 Gossypium hirsutum
Gohir.D08G021800 Gossypium hirsutum
Gorai.004G017100 Gossypium raimondii
GSVIVG01025433001 Vitis vinifera
HanXRQChr01g0021661 Helianthus annuus
HanXRQChr13g0405321 Helianthus annuus
Haze_22956 Corylus avellana
Haze_22962 Corylus avellana
Haze_22967 Corylus avellana
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla
HPP92_017297 Vanilla planifolia
Hund03769 Selenicereus undatus
Lalb_Chr08g0230321 Lupinus albus
Lj2A726G7 Lonicera japonica
Lj6g0003060 Lotus japonicus
Lsat_1_v5_gn_1_67700 Lactuca sativa
Lsat_1_v5_gn_6_54260 Lactuca sativa
Manes.01G036600 Manihot esculenta
Manes.04G095700 Manihot esculenta
Mapoly0011s0044 Marchantia polymorpha
MBI05_g32463_MAGBIO Magnolia biondii
MD03G1005700 Malus domestica
MD11G1008600 Malus domestica
Medtr3g083880 Medicago truncatula
MELO3C021620.2 Cucumis melo
Migut.D02547 Erythranthe guttata
MSTRG.18872 Avicennia marina
Nitab4.5_0000131g0050 Nicotiana tabacum
Nitab4.5_0006954g0010 Nicotiana tabacum
Nn7g35895 Nelumbo nucifera
Oeu059672.2 Olea europaea
Os01g0648500 Oryza sativa ssp. japonica
Os05g0347000 Oryza sativa ssp. japonica
Peaxi162Scf01112g00112 Petunia axillaris
PGR102G2828 Punica granatum
PGSC0003DMG400009351 Solanum tuberosum
PGSC0003DMG401025662 Solanum tuberosum
Phvul.001G056500 Phaseolus vulgaris
Phvul.001G056600 Phaseolus vulgaris
Potri.001G006300 Populus trichocarpa
Potri.003G218700 Populus trichocarpa
Pp3c14_18710 Physcomitrium patens
Pp3c1_41986 Physcomitrium patens
PRCOL_00003189 Prasinoderma coloniale
Prupe.6G007100 Prunus persica
Psat5g102320 Pisum sativum
PSO210G5203 Papaver somniferum
PSO761G0405 Papaver somniferum
QL01p008475 Quercus lobata
RcHm_v2.0_Chr4g0431981 Rosa chinensis
RcHm_v2.0_Chr5g0083141 Rosa chinensis
Rhsim02G0077200 Rhododendron simsii
Rhsim09G0027500 Rhododendron simsii
RhsimUnG0194900 Rhododendron simsii
Sabra01G0004700 Salix brachista
Sabra03G0163100 Salix brachista
SalBow4G3146 Salvia bowleyana
SalBow6G7108 Salvia bowleyana
Sc10g0001010 Simmondsia chinensis
Sed0016974 Sechium edule
Sed0023881 Sechium edule
SEGI_04342 Sequoiadendron giganteum
SEGI_26181 Sequoiadendron giganteum
SGA_v2.0_scaffold13G06338 Striga asiatica
SGA_v2.0_scaffold2280G54098 Striga asiatica
SGA_v2.0_scaffold329G48825 Striga asiatica
SGA_v2.0_scaffold521G52700 Striga asiatica
SGA_v2.0_scaffold552G52891 Striga asiatica
SGA_v2.0_scaffold674G53431 Striga asiatica
SGA_v2.0_scaffold674G53436 Striga asiatica
SGA_v2.0_scaffold693G53465 Striga asiatica
SGA_v2.0_scaffold6G03409 Striga asiatica
SGA_v2.0_scaffold738G53541 Striga asiatica
SMO146G0138 Selaginella moellendorffii
SMO169G0010 Selaginella moellendorffii
Solyc04g076580.4 Solanum lycopersicum
Sopen00g013070 Solanum pennellii
Sopen04g030300 Solanum pennellii
Sopen04g030320 Solanum pennellii
Sp1g40960 Schrenkiella parvula
TAR623G1159 Trochodendron aralioides
TAR623G1727 Trochodendron aralioides
THA.LOC104822674 Tarenaya hassleriana
Thecc.09G208500 Theobroma cacao
Thhalv10011786m.g Eutrema salsugineum
Thhalv10012232m.g Eutrema salsugineum
TPR.G24159 Trifolium pratense
TWI60G1521 Tripterygium wilfordii
unitig_26.g9445 Utricularia gibba
unitig_749.g13584 Utricularia gibba
vmacro00623 Vaccinium macrocarpon
VMungo0647G2277 Vigna mungo
Zm00001eb059570 Zea mays
Zm00001eb068820 Zea mays
Zm00001eb211560 Zea mays
Zm00001eb233380 Zea mays
Zm00001eb395740 Zea mays

User provided reference genes

Program Settings