Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A10p04360 Brassica napus
Aa31LG1G19040 Aethionema arabicum
Aa31sc269G30 Aethionema arabicum
Actinidia28087 Actinidia chinensis
Ah.04g150020 Amaranthus hybridus
AL1G15500 Arabidopsis lyrata
AL1G17960 Arabidopsis lyrata
Aqoxy1G01531 Aquilegia oxysepala
Aqoxy1G01532 Aquilegia oxysepala
Aqoxy4G03056 Aquilegia oxysepala
Aqoxy5G00466 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.58SQTR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GT3IJ8 Arachis hypogaea
AT1G05600 Arabidopsis thaliana
AT1G07740 Arabidopsis thaliana
ATR0078G009 Amborella trichopoda
Atru.chr5.763 Acer truncatum
AUR62020973 Chenopodium quinoa
AUR62043199 Chenopodium quinoa
AUR62043808 Chenopodium quinoa
AUR62043809 Chenopodium quinoa
BcaB02g06837 Brassica carinata
BcaB03g13373 Brassica carinata
BcaC05g24360 Brassica carinata
BolC5t29174H Brassica oleracea
BraA10t42703Z Brassica rapa
C05p03960 Brassica napus
CAN.G177.21 Capsicum annuum
CANSAT80G1557 Cannabis sativa
CARHR004840 Cardamine hirsuta
CARHR005100 Cardamine hirsuta
CARHR007530 Cardamine hirsuta
Carub.0001s0493 Capsella rubella
Carub.0011s0004 Capsella rubella
Ca_25358_v3 Cicer arietinum L.
Cc11_g01170 Coffea canephora
CDE07G0885 Ceratophyllum demersum
CDE07G1345 Ceratophyllum demersum
Cfa003738 Carpinus fangiana
Ciclev10019806m.g Citrus clementina
CiPaw.02G044800 Carya illinoinensis
ClCG06G002250 Citrullus lanatus
COL.COLO4_17892 Corchorus olitorius
Cpa.g.sc2478.1 Carica papaya
Cpa.g.sc374.1 Carica papaya
Cpa.g.sc4173.1 Carica papaya
CsaV3_6G008310 Cucumis sativus L.
CSS0030036 Camellia sinensis var. sinensis
CSS0034590 Camellia sinensis var. sinensis
DCAR_014720 Daucus carota
DCAR_030646 Daucus carota
Dinv20850 Davidia involucrata
Dinv20851 Davidia involucrata
Duzib052G0775 Durio zibethinus
Duzib150G0859 Durio zibethinus
ECA234G2429 Erigeron canadensis
ECA236G2878 Erigeron canadensis
EL10Ac3g07373 Beta vulgaris
Eucgr.E02818 Eucalyptus grandis
Eucgr.K02099 Eucalyptus grandis
FAN01G0259 Fragaria x ananassa
FAN01G0423 Fragaria x ananassa
FAN03G0025 Fragaria x ananassa
FAN03G2565 Fragaria x ananassa
FAN06G0160 Fragaria x ananassa
FAN06G1186 Fragaria x ananassa
FAN06G1224 Fragaria x ananassa
FAN06G1936 Fragaria x ananassa
FAN06G3550 Fragaria x ananassa
FAN06G5063 Fragaria x ananassa
FAN10G1051 Fragaria x ananassa
FAN10G2969 Fragaria x ananassa
FAN10G3574 Fragaria x ananassa
FAN12G1026 Fragaria x ananassa
FAN16G3353 Fragaria x ananassa
FvH4_4g01580 Fragaria vesca
FvH4_7g16930 Fragaria vesca
FvH4_7g21360 Fragaria vesca
FvH4_7g21510 Fragaria vesca
FvH4_7g21571 Fragaria vesca
Glyma.07G105800 Glycine max
Glyma.09G172300 Glycine max
Glyma.14G108600 Glycine max
Gohir.A12G032800 Gossypium hirsutum
Gohir.D12G039800 Gossypium hirsutum
Gorai.008G041500 Gossypium raimondii
GSVIVG01027435001 Vitis vinifera
HanXRQChr10g0294731 Helianthus annuus
Haze_15730 Corylus avellana
Hma1.2p1_0922F.1_g236940 Hydrangea macrophylla
Hma1.2p1_1112F.1_g258610 Hydrangea macrophylla
Hma1.2p1_1427F.1_g282910 Hydrangea macrophylla
HPP92_007254 Vanilla planifolia
HPP92_007271 Vanilla planifolia
Hund17105 Selenicereus undatus
Lalb_Chr01g0003871 Lupinus albus
Lalb_Chr13g0291111 Lupinus albus
Lj2g0009525 Lotus japonicus
Lj3g0020241 Lotus japonicus
Lj4g0009241 Lotus japonicus
Lj6P606T31 Lonicera japonica
Lsat_1_v5_gn_5_104340 Lactuca sativa
Manes.01G240200 Manihot esculenta
Manes.11G135700 Manihot esculenta
MBI12_g14810_MAGBIO Magnolia biondii
MBI15_g22638_MAGBIO Magnolia biondii
MBI15_g35152_MAGBIO Magnolia biondii
MD12G1085500 Malus domestica
Medtr5g048070 Medicago truncatula
Medtr6g071317 Medicago truncatula
Medtr6g071320 Medicago truncatula
MELO3C022307.2 Cucumis melo
Migut.J01410 Erythranthe guttata
MSTRG.12628 Avicennia marina
MSTRG.6175 Avicennia marina
Nn1g05237 Nelumbo nucifera
Oeu017054.1 Olea europaea
Os01g0913800 Oryza sativa ssp. japonica
Peaxi162Scf00542g00067 Petunia axillaris
PGR044G1707 Punica granatum
PGSC0003DMG400017403 Solanum tuberosum
Phvul.004G147700 Phaseolus vulgaris
Potri.002G179300 Populus trichocarpa
Potri.003G204100 Populus trichocarpa
Prupe.2G028400 Prunus persica
Psat1g029400 Pisum sativum
QL01p033616 Quercus lobata
QL06p019283 Quercus lobata
QL11p014332 Quercus lobata
QL11p014366 Quercus lobata
QL11p014962 Quercus lobata
QL11p015204 Quercus lobata
RcHm_v2.0_Chr1g0360171 Rosa chinensis
RcHm_v2.0_Chr5g0062521 Rosa chinensis
Rhsim01G0180200 Rhododendron simsii
Rhsim01G0224000 Rhododendron simsii
Sabra02G0134600 Salix brachista
SalBow3G0045 Salvia bowleyana
SalBow6G2521 Salvia bowleyana
Sc23g0001810 Simmondsia chinensis
Sed0025263 Sechium edule
SEGI_15528 Sequoiadendron giganteum
SEGI_16355 Sequoiadendron giganteum
SEGI_39174 Sequoiadendron giganteum
SGA_v2.0_scaffold66G22520 Striga asiatica
SHI05977 Sapria himalayana
SHI19586 Sapria himalayana
SHI19587 Sapria himalayana
SHI34133 Sapria himalayana
Solyc07g045380.3 Solanum lycopersicum
Sopen07g023920 Solanum pennellii
Sp1g04450 Schrenkiella parvula
Sp1g06450 Schrenkiella parvula
Sp4g07380 Schrenkiella parvula
Sp4g07390 Schrenkiella parvula
TAR375G0273 Trochodendron aralioides
Thecc.02G040900 Theobroma cacao
Thhalv10007424m.g Eutrema salsugineum
Thhalv10009298m.g Eutrema salsugineum
TPR.G22318 Trifolium pratense
TWI31G0770 Tripterygium wilfordii
TWI59G0252 Tripterygium wilfordii
vmacro12640 Vaccinium macrocarpon
VMungo0464G1245 Vigna mungo
Zm00001eb364960 Zea mays

User provided reference genes

Program Settings