Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p33800 Brassica napus
A03p42000 Brassica napus
A05p27660 Brassica napus
A06p02510 Brassica napus
Aa31LG10G3570 Aethionema arabicum
Aa31LG8G7770 Aethionema arabicum
Actinidia06914 Actinidia chinensis
Actinidia16340 Actinidia chinensis
Actinidia23976 Actinidia chinensis
Ah.06g194080 Amaranthus hybridus
AL1G59250 Arabidopsis lyrata
AL3G35000 Arabidopsis lyrata
Aqoxy1G00277 Aquilegia oxysepala
AT1G51400 Arabidopsis thaliana
AT3G21055 Arabidopsis thaliana
ATR0763G199 Amborella trichopoda
Atru.chr11.2609 Acer truncatum
Atru.chr3.2699 Acer truncatum
AUR62000132 Chenopodium quinoa
AUR62019312 Chenopodium quinoa
BcaB04g19135 Brassica carinata
BcaB04g20616 Brassica carinata
BcaB06g26173 Brassica carinata
BcaB07g33586 Brassica carinata
BcaC01g03530 Brassica carinata
BcaC05g28213 Brassica carinata
BcaC08g43309 Brassica carinata
BcaC09g49044 Brassica carinata
BolC1t04268H Brassica oleracea
BolC3t17427H Brassica oleracea
BolC5t33035H Brassica oleracea
BolC6t35768H Brassica oleracea
BraA01t03491Z Brassica rapa
BraA03t13354Z Brassica rapa
BraA05t21659Z Brassica rapa
BraA06t23458Z Brassica rapa
C01p43220 Brassica napus
C03p51410 Brassica napus
C05p43040 Brassica napus
C06p06560 Brassica napus
CAN.G821.8 Capsicum annuum
CANSAT54G2544 Cannabis sativa
CARHR041550 Cardamine hirsuta
CARHR096900 Cardamine hirsuta
Carub.0003s2095 Capsella rubella
Cc06_g23280 Coffea canephora
CDE05G0821 Ceratophyllum demersum
CDE05G3212 Ceratophyllum demersum
Cfa009783 Carpinus fangiana
Ciclev10017247m.g Citrus clementina
Ciclev10033132m.g Citrus clementina
CiPaw.13G159300 Carya illinoinensis
CiPaw.14G118100 Carya illinoinensis
ClCG02G023150 Citrullus lanatus
COL.COLO4_06120 Corchorus olitorius
Cpa.g.sc125.13 Carica papaya
Cpa.g.sc84.45 Carica papaya
CSS0020424 Camellia sinensis var. sinensis
CSS0050517 Camellia sinensis var. sinensis
DCAR_002077 Daucus carota
DCAR_029953 Daucus carota
DCAR_031628 Daucus carota
Dinv09347 Davidia involucrata
Dinv22170 Davidia involucrata
Dinv43432 Davidia involucrata
Duzib133G0767 Durio zibethinus
Duzib138G1697 Durio zibethinus
Duzib150G0004 Durio zibethinus
Duzib168G1465 Durio zibethinus
ECA233G4176 Erigeron canadensis
EL10Ac2g04340 Beta vulgaris
EL10Ac4g10238 Beta vulgaris
Eucgr.B03692 Eucalyptus grandis
FAN11G3362 Fragaria x ananassa
FAN16G2720 Fragaria x ananassa
FAN21G1561 Fragaria x ananassa
FAN25G2913 Fragaria x ananassa
FvH4_3g28710 Fragaria vesca
Glyma.10G089300 Glycine max
Glyma.10G089500 Glycine max
Glyma.15G275600 Glycine max
Glyma.15G275700 Glycine max
Gohir.A08G143800 Gossypium hirsutum
Gohir.A09G113900 Gossypium hirsutum
Gohir.D08G164800 Gossypium hirsutum
Gohir.D09G110500 Gossypium hirsutum
Gorai.004G171800 Gossypium raimondii
HanXRQChr02g0052031 Helianthus annuus
HanXRQChr13g0401101 Helianthus annuus
Haze_23147 Corylus avellana
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla
Lalb_Chr01g0000351 Lupinus albus
Lj3g0003624 Lotus japonicus
Lj3g0019333 Lotus japonicus
Lsat_1_v5_gn_6_25460 Lactuca sativa
Manes.06G163500 Manihot esculenta
Manes.14G003500 Manihot esculenta
MBI02_g05661_MAGBIO Magnolia biondii
MD03G1173700 Malus domestica
MD11G1191900 Malus domestica
Medtr3g030850 Medicago truncatula
Medtr3g030860 Medicago truncatula
Medtr4g037505 Medicago truncatula
MELO3C014587.2 Cucumis melo
Migut.D00609 Erythranthe guttata
Migut.N02326 Erythranthe guttata
Nitab4.5_0000570g0060 Nicotiana tabacum
Nitab4.5_0002741g0110 Nicotiana tabacum
Nitab4.5_0002741g0120 Nicotiana tabacum
Nitab4.5_0004438g0050 Nicotiana tabacum
Nitab4.5_0004741g0020 Nicotiana tabacum
Nn2g15305 Nelumbo nucifera
Nn7g36237 Nelumbo nucifera
Nn7g36238 Nelumbo nucifera
Oeu033136.1 Olea europaea
Oeu063326.1 Olea europaea
Os02g0581100 Oryza sativa ssp. japonica
Peaxi162Scf00004g00263 Petunia axillaris
Peaxi162Scf00032g00063 Petunia axillaris
Peaxi162Scf00032g00064 Petunia axillaris
PGR102G2953 Punica granatum
PGR119G0693 Punica granatum
PGSC0003DMG400004639 Solanum tuberosum
PGSC0003DMG400010498 Solanum tuberosum
PGSC0003DMG400019098 Solanum tuberosum
Phvul.011G009700 Phaseolus vulgaris
Potri.001G256900 Populus trichocarpa
Potri.001G265000 Populus trichocarpa
Potri.009G052500 Populus trichocarpa
Prupe.2G015200 Prunus persica
Prupe.4G250700 Prunus persica
Psat5g208760 Pisum sativum
Psat7g196400 Pisum sativum
PSO541G0301 Papaver somniferum
QL01p004491 Quercus lobata
QL01p004584 Quercus lobata
QL04p008292 Quercus lobata
RcHm_v2.0_Chr5g0052351 Rosa chinensis
Rhsim01G0192200 Rhododendron simsii
Sc09g0000770 Simmondsia chinensis
Sed0017781 Sechium edule
Sed0025860 Sechium edule
SEGI_11181 Sequoiadendron giganteum
SGA_v2.0_scaffold3G01494 Striga asiatica
Solyc01g008510.3 Solanum lycopersicum
Solyc12g099650.2 Solanum lycopersicum
Sopen01g004050 Solanum pennellii
Sp1g38070 Schrenkiella parvula
Sp3g19010 Schrenkiella parvula
TAR623G0940 Trochodendron aralioides
TAR633G1399 Trochodendron aralioides
THA.LOC104816876 Tarenaya hassleriana
THA.LOC104817911 Tarenaya hassleriana
Thecc.01G409600 Theobroma cacao
Thecc.09G235200 Theobroma cacao
Thhalv10011883m.g Eutrema salsugineum
Thhalv10021813m.g Eutrema salsugineum
TPR.G35302 Trifolium pratense
TPR.G35305 Trifolium pratense
TPR.G3668 Trifolium pratense
TWI32G0064 Tripterygium wilfordii
TWI34G1192 Tripterygium wilfordii
unitig_8.g2993 Utricularia gibba
VMungo1127G0621 Vigna mungo
Zm00001eb245320 Zea mays

User provided reference genes

Program Settings