Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p19080 Brassica napus
Aa31LG2G11490 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis
Actinidia01508 Actinidia chinensis
Actinidia25851 Actinidia chinensis
Ah.04g158690 Amaranthus hybridus
AL1G66120 Arabidopsis lyrata
Aqoxy2G02767 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea
AT1G56423 Arabidopsis thaliana
ATR0796G255 Amborella trichopoda
Atru.chr2.195 Acer truncatum
AUR62000397 Chenopodium quinoa
AUR62006753 Chenopodium quinoa
BcaB07g31123 Brassica carinata
BcaC04g22056 Brassica carinata
BolC9t55323H Brassica oleracea
BraA09t37526Z Brassica rapa
C09p24060 Brassica napus
CAN.G100.73 Capsicum annuum
CANSAT54G0622 Cannabis sativa
CARHR055200 Cardamine hirsuta
Carub.0002s0772 Capsella rubella
Ca_10171_v3 Cicer arietinum L.
Cc02_g35030 Coffea canephora
CDE05G2260 Ceratophyllum demersum
CDE11G0488 Ceratophyllum demersum
Cfa006702 Carpinus fangiana
Ciclev10002200m.g Citrus clementina
CiPaw.07G029600 Carya illinoinensis
CiPaw.08G155500 Carya illinoinensis
CiPaw.14G122400 Carya illinoinensis
ClCG00G002440 Citrullus lanatus
ClCG02G014940 Citrullus lanatus
COL.COLO4_05553 Corchorus olitorius
COL.COLO4_28325 Corchorus olitorius
Cpa.g.sc48.160 Carica papaya
CsaV3_2G007060 Cucumis sativus L.
CSS0008259 Camellia sinensis var. sinensis
CSS0024329 Camellia sinensis var. sinensis
CSS0041734 Camellia sinensis var. sinensis
DCAR_005425 Daucus carota
DCAR_018300 Daucus carota
DCAR_025282 Daucus carota
DCAR_029352 Daucus carota
Dinv10100 Davidia involucrata
Dinv24444 Davidia involucrata
Dinv30893 Davidia involucrata
Duzib106G0903 Durio zibethinus
Duzib133G1105 Durio zibethinus
Duzib177G0587 Durio zibethinus
ECA234G3802 Erigeron canadensis
EL10Ac4g09452 Beta vulgaris
Eucgr.H03290 Eucalyptus grandis
FAN02G3541 Fragaria x ananassa
FAN05G3791 Fragaria x ananassa
FAN09G1150 Fragaria x ananassa
FAN14G5021 Fragaria x ananassa
FvH4_6g07440 Fragaria vesca
Glyma.03G231300 Glycine max
Glyma.10G147100 Glycine max
Glyma.19G228500 Glycine max
Glyma.20G097600 Glycine max
Gohir.A11G293141 Gossypium hirsutum
Gohir.A13G175800 Gossypium hirsutum
Gohir.D11G299703 Gossypium hirsutum
Gohir.D11G307566 Gossypium hirsutum
Gohir.D13G181500 Gossypium hirsutum
Gorai.007G338000 Gossypium raimondii
Gorai.013G207000 Gossypium raimondii
GSVIVG01031240001 Vitis vinifera
HanXRQChr03g0072861 Helianthus annuus
HanXRQChr10g0294471 Helianthus annuus
Haze_04061 Corylus avellana
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla
HPP92_003567 Vanilla planifolia
HPP92_026862 Vanilla planifolia
Hund21868 Selenicereus undatus
Lalb_Chr02g0147811 Lupinus albus
Lalb_Chr18g0046091 Lupinus albus
Lj1g0016387 Lotus japonicus
Lj2A1205T38 Lonicera japonica
Lj5g0009766 Lotus japonicus
Lj5P334T30 Lonicera japonica
Lsat_1_v5_gn_3_11681 Lactuca sativa
Lsat_1_v5_gn_5_104100 Lactuca sativa
Lsat_1_v5_gn_6_35861 Lactuca sativa
Lsat_1_v5_gn_7_81020 Lactuca sativa
Lsat_1_v5_gn_9_122281 Lactuca sativa
Manes.08G111300 Manihot esculenta
Manes.09G176700 Manihot esculenta
Mapoly0127s0047 Marchantia polymorpha
MBI18_g17317_MAGBIO Magnolia biondii
MD04G1193100 Malus domestica
MD12G1206000 Malus domestica
Medtr1g084040 Medicago truncatula
Medtr7g112110 Medicago truncatula
Medtr7g112120 Medicago truncatula
MELO3C004187.2 Cucumis melo
Migut.B00969 Erythranthe guttata
Nitab4.5_0000368g0100 Nicotiana tabacum
Nitab4.5_0003540g0020 Nicotiana tabacum
Nitab4.5_0004873g0020 Nicotiana tabacum
Nitab4.5_0008277g0030 Nicotiana tabacum
Nn3g16212 Nelumbo nucifera
Oeu013207.1 Olea europaea
Oeu016567.1 Olea europaea
Os03g0307000 Oryza sativa ssp. japonica
Peaxi162Scf00484g00005 Petunia axillaris
Peaxi162Scf00673g00321 Petunia axillaris
Peaxi162Scf00691g00218 Petunia axillaris
PGR031G2746 Punica granatum
PGSC0003DMG400002801 Solanum tuberosum
PGSC0003DMG400009008 Solanum tuberosum
Phvul.001G225100 Phaseolus vulgaris
Phvul.007G201300 Phaseolus vulgaris
Potri.005G017400 Populus trichocarpa
Potri.013G008700 Populus trichocarpa
Pp3c20_10160 Physcomitrium patens
Pp3c8_19980 Physcomitrium patens
Prupe.6G313200 Prunus persica
Psat0s3400g0040 Pisum sativum
Psat3g012800 Pisum sativum
PSO210G0294 Papaver somniferum
PSO761G0637 Papaver somniferum
QL03p013641 Quercus lobata
QL03p013649 Quercus lobata
QL03p039848 Quercus lobata
RcHm_v2.0_Chr3g0457041 Rosa chinensis
Rhsim01G0290900 Rhododendron simsii
Rhsim05G0126500 Rhododendron simsii
Sabra05G0011400 Salix brachista
SalBow2G0857 Salvia bowleyana
SalBow7G1726 Salvia bowleyana
Sc16g0009030 Simmondsia chinensis
Sed0005794 Sechium edule
Sed0011283 Sechium edule
SEGI_10604 Sequoiadendron giganteum
SEGI_19544 Sequoiadendron giganteum
SGA_v2.0_scaffold53G19289 Striga asiatica
SMO119G0102 Selaginella moellendorffii
Solyc01g079460.2 Solanum lycopersicum
Solyc01g100480.3 Solanum lycopersicum
Sopen01g031230 Solanum pennellii
Sopen01g043990 Solanum pennellii
Sp2g06420 Schrenkiella parvula
TAR362G0651 Trochodendron aralioides
THA.LOC104816889 Tarenaya hassleriana
Thecc.01G291900 Theobroma cacao
Thecc.01G313500 Theobroma cacao
Thecc.01G313600 Theobroma cacao
Thecc.05G323000 Theobroma cacao
Thhalv10023634m.g Eutrema salsugineum
TPR.G1662 Trifolium pratense
TPR.G2612 Trifolium pratense
TWI56G1455 Tripterygium wilfordii
unitig_37.g12619 Utricularia gibba
VMungo0720G2336 Vigna mungo
VMungo1383G0172 Vigna mungo
Zm00001eb014630 Zea mays
Zm00001eb396130 Zea mays

User provided reference genes

Program Settings