Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p08400 Brassica napus
Aa31LG5G22990 Aethionema arabicum
Aa31LG5G23020 Aethionema arabicum
Aa31sc112G60 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.5209 Anthoceros agrestis
Actinidia29866 Actinidia chinensis
Actinidia38053 Actinidia chinensis
AL4G34050 Arabidopsis lyrata
AL4G34080 Arabidopsis lyrata
Aqoxy7G01016 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1PWX74 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.63NC9C Arachis hypogaea
AT2G37560 Arabidopsis thaliana
ATR0100G023 Amborella trichopoda
Atru.chr8.1940 Acer truncatum
AUR62022427 Chenopodium quinoa
AUR62039303 Chenopodium quinoa
BcaB02g09273 Brassica carinata
BcaC02g11869 Brassica carinata
BolC4t22638H Brassica oleracea
BraA05t19805Z Brassica rapa
C04p10400 Brassica napus
CAN.G65.190 Capsicum annuum
CANSAT01G2810 Cannabis sativa
CARHR132030 Cardamine hirsuta
Carub.0004s1948 Capsella rubella
Ca_01811_v3 Cicer arietinum L.
Ca_29610_v3 Cicer arietinum L.
CBR_g6665 Chara braunii
Cc00_g00370 Coffea canephora
Cc00_g16720 Coffea canephora
Cc01_g09720 Coffea canephora
Cc02_g31720 Coffea canephora
Cc06_g20720 Coffea canephora
Cc09_g06650 Coffea canephora
Cc10_g04310 Coffea canephora
Cc11_g02680 Coffea canephora
CDE10G0377 Ceratophyllum demersum
CDE10G1325 Ceratophyllum demersum
Cfa018528 Carpinus fangiana
Cfa024619 Carpinus fangiana
Ciclev10012027m.g Citrus clementina
CiPaw.15G061500 Carya illinoinensis
ClCG08G015740 Citrullus lanatus
COL.COLO4_14836 Corchorus olitorius
Cpa.g.sc973.4 Carica papaya
Cre03.g199400 Chlamydomonas reinhardtii
CsaV3_2G028020 Cucumis sativus L.
CSS0003524 Camellia sinensis var. sinensis
CSS0037728 Camellia sinensis var. sinensis
Dinv39327 Davidia involucrata
Duzib128G0657 Durio zibethinus
ECA247G2793 Erigeron canadensis
EL10Ac3g06655 Beta vulgaris
EL10Ac4g08135 Beta vulgaris
Eucgr.F00239 Eucalyptus grandis
FAN20G1942 Fragaria x ananassa
FAN27G2417 Fragaria x ananassa
FvH4_2g34610 Fragaria vesca
Glyma.14G082100 Glycine max
Glyma.17G243200 Glycine max
Gohir.A11G326200 Gossypium hirsutum
Gohir.D01G124400 Gossypium hirsutum
Gohir.D02G104501 Gossypium hirsutum
Gohir.D02G123750 Gossypium hirsutum
Gohir.D03G074850 Gossypium hirsutum
Gohir.D04G089650 Gossypium hirsutum
Gohir.D09G037800 Gossypium hirsutum
Gohir.D09G088725 Gossypium hirsutum
Gohir.D09G120150 Gossypium hirsutum
Gohir.D10G134400 Gossypium hirsutum
Gohir.D10G137766 Gossypium hirsutum
Gohir.D11G345100 Gossypium hirsutum
Gohir.D12G080700 Gossypium hirsutum
Gorai.004G133100 Gossypium raimondii
Gorai.005G118700 Gossypium raimondii
Gorai.005G130400 Gossypium raimondii
Gorai.006G043100 Gossypium raimondii
Gorai.007G375500 Gossypium raimondii
Gorai.008G056700 Gossypium raimondii
Gorai.011G153000 Gossypium raimondii
Gorai.011G277900 Gossypium raimondii
Gorai.012G099900 Gossypium raimondii
GSVIVG01009522001 Vitis vinifera
HanXRQChr04g0103531 Helianthus annuus
Haze_17543 Corylus avellana
Haze_17552 Corylus avellana
Hma1.2p1_0718F.1_g208420 Hydrangea macrophylla
HPP92_027219 Vanilla planifolia
HPP92_027220 Vanilla planifolia
Lalb_Chr19g0129351 Lupinus albus
Lj3C736T6 Lonicera japonica
Lj5g0003666 Lotus japonicus
Lsat_1_v5_gn_1_20280 Lactuca sativa
Manes.08G078200 Manihot esculenta
Mapoly0106s0035 Marchantia polymorpha
MBI02_g17334_MAGBIO Magnolia biondii
MCO16G222 Micromonas commoda
MD08G1103300 Malus domestica
MD15G1084600 Malus domestica
Medtr1g019770 Medicago truncatula
MELO3C010882.2 Cucumis melo
Migut.N02703 Erythranthe guttata
MSTRG.24327 Avicennia marina
Nitab4.5_0000017g0120 Nicotiana tabacum
Nitab4.5_0000111g0020 Nicotiana tabacum
Nitab4.5_0002045g0130 Nicotiana tabacum
Nitab4.5_0002664g0020 Nicotiana tabacum
Nitab4.5_0004918g0050 Nicotiana tabacum
Nn1g05830 Nelumbo nucifera
Oeu018211.1 Olea europaea
Os03g0184700 Oryza sativa ssp. japonica
Peaxi162Scf00003g02311 Petunia axillaris
Peaxi162Scf00162g00029 Petunia axillaris
Peaxi162Scf00929g00211 Petunia axillaris
PGR031G2227 Punica granatum
PGSC0003DMG400027003 Solanum tuberosum
Phvul.001G021100 Phaseolus vulgaris
Potri.003G094800 Populus trichocarpa
Pp3c18_14740 Physcomitrium patens
PRCOL_00004897 Prasinoderma coloniale
Prupe.1G438300 Prunus persica
Psat6g012600 Pisum sativum
PSO339G6255 Papaver somniferum
PSO541G1765 Papaver somniferum
PSO675G0522 Papaver somniferum
PSO724G0286 Papaver somniferum
PSO724G0742 Papaver somniferum
QL02p005360 Quercus lobata
RcHm_v2.0_Chr6g0307531 Rosa chinensis
RcHm_v2.0_Chr6g0307691 Rosa chinensis
Rhsim07G0229700 Rhododendron simsii
Rhsim10G0028100 Rhododendron simsii
Rhsim10G0028600 Rhododendron simsii
Sabra03G0064000 Salix brachista
Sabra07G0018600 Salix brachista
Sabra11G0061200 Salix brachista
Sabra15G0136400 Salix brachista
SalBow2G0598 Salvia bowleyana
SalBow2G0695 Salvia bowleyana
SalBow2G1152 Salvia bowleyana
SalBow2G2012 Salvia bowleyana
SalBow2G2463 Salvia bowleyana
SalBow2G2610 Salvia bowleyana
SalBow3G4106 Salvia bowleyana
Sc07g0003460 Simmondsia chinensis
Sed0023883 Sechium edule
SEGI_21568 Sequoiadendron giganteum
SEGI_22221 Sequoiadendron giganteum
SGA_v2.0_scaffold204G41641 Striga asiatica
SHI12655 Sapria himalayana
SMO147G0302 Selaginella moellendorffii
Solyc06g073510.3 Solanum lycopersicum
Sopen06g029870 Solanum pennellii
Sp4g19910 Schrenkiella parvula
TAR376G0692 Trochodendron aralioides
THA.LOC104806568 Tarenaya hassleriana
THA.LOC104809222 Tarenaya hassleriana
Thecc.05G042500 Theobroma cacao
Thhalv10016846m.g Eutrema salsugineum
TPR.G17553 Trifolium pratense
TWI53G0519 Tripterygium wilfordii
TWI53G0792 Tripterygium wilfordii
unitig_26.g10027 Utricularia gibba
vmacro04457 Vaccinium macrocarpon
VMungo0647G0522 Vigna mungo
Zm00001eb248940 Zea mays

User provided reference genes

Program Settings