Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01250 Brassica napus
A05p07590 Brassica napus
Aa31LG1G21620 Aethionema arabicum
Aa31sc114G20 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1348 Anthoceros agrestis
Actinidia29061 Actinidia chinensis
AL4G35730 Arabidopsis lyrata
AL6G13070 Arabidopsis lyrata
Aqoxy4G02184 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.ASGW3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E0KVE0 Arachis hypogaea
AT2G38460 Arabidopsis thaliana
AT5G03570 Arabidopsis thaliana
ATR0594G059 Amborella trichopoda
Atru.chr8.2352 Acer truncatum
AUR62006302 Chenopodium quinoa
AUR62026347 Chenopodium quinoa
BcaB01g05801 Brassica carinata
BcaB01g05813 Brassica carinata
BcaB02g09172 Brassica carinata
BcaC02g11997 Brassica carinata
BcaNung02099 Brassica carinata
BolC3t12713H Brassica oleracea
BolC4t22497H Brassica oleracea
BolC4t22513H Brassica oleracea
BolC7t44561H Brassica oleracea
BraA03t09505Z Brassica rapa
BraA05t19726Z Brassica rapa
BraA05t19727Z Brassica rapa
C03p01610 Brassica napus
C04p09070 Brassica napus
C04p09080 Brassica napus
C07p40260 Brassica napus
CAN.G955.1 Capsicum annuum
CANSAT35G1695 Cannabis sativa
CARHR133140 Cardamine hirsuta
CARHR209750 Cardamine hirsuta
Carub.0004s2043 Capsella rubella
Carub.0006s0241 Capsella rubella
Ca_27544_v3 Cicer arietinum L.
CBR_g42060 Chara braunii
CBR_g42062 Chara braunii
Cc00_g33920 Coffea canephora
Cc06_g00690 Coffea canephora
CDE04G3038 Ceratophyllum demersum
Cfa017100 Carpinus fangiana
Cfa024502 Carpinus fangiana
Ciclev10011564m.g Citrus clementina
CiPaw.09G216200 Carya illinoinensis
CiPaw.09G216400 Carya illinoinensis
ClCG04G006590 Citrullus lanatus
COL.COLO4_14437 Corchorus olitorius
COL.COLO4_17446 Corchorus olitorius
COL.COLO4_28893 Corchorus olitorius
Cpa.g.sc5.254 Carica papaya
Cre16.g687000 Chlamydomonas reinhardtii
CsaV3_4G026660 Cucumis sativus L.
CSS0015068 Camellia sinensis var. sinensis
CSS0016892 Camellia sinensis var. sinensis
DCAR_023991 Daucus carota
Dinv25280 Davidia involucrata
Duzib093G0769 Durio zibethinus
Duzib177G0173 Durio zibethinus
ECA247G0592 Erigeron canadensis
EL10Ac7g16784 Beta vulgaris
EL10Ac7g17016 Beta vulgaris
EL10As8g23831 Beta vulgaris
Eucgr.A00629 Eucalyptus grandis
Eucgr.A00630 Eucalyptus grandis
Eucgr.A00632 Eucalyptus grandis
Eucgr.A00634 Eucalyptus grandis
Eucgr.A00635 Eucalyptus grandis
FAN02G2747 Fragaria x ananassa
FAN05G1507 Fragaria x ananassa
FAN05G3841 Fragaria x ananassa
FAN09G3783 Fragaria x ananassa
FAN14G5304 Fragaria x ananassa
FvH4_6g10490 Fragaria vesca
Glyma.01G128300 Glycine max
Glyma.03G042400 Glycine max
Glyma.03G042500 Glycine max
Gohir.A01G170500 Gossypium hirsutum
Gohir.D01G161500 Gossypium hirsutum
Gorai.002G200200 Gossypium raimondii
GSVIVG01030250001 Vitis vinifera
GSVIVG01030252001 Vitis vinifera
HanXRQChr10g0287841 Helianthus annuus
HanXRQChr10g0287851 Helianthus annuus
HanXRQChr15g0463391 Helianthus annuus
Haze_21100 Corylus avellana
Hma1.2p1_0501F.1_g167250 Hydrangea macrophylla
HPP92_012007 Vanilla planifolia
HPP92_012012 Vanilla planifolia
Hund19850 Selenicereus undatus
Lalb_Chr13g0291391 Lupinus albus
Lj3C944T3 Lonicera japonica
Lj3g0011406 Lotus japonicus
Lj3g0025170 Lotus japonicus
Lj3g0027471 Lotus japonicus
Lsat_1_v5_gn_9_37021 Lactuca sativa
Manes.09G113000 Manihot esculenta
Manes.09G113100 Manihot esculenta
Mapoly0049s0027 Marchantia polymorpha
MBI15_g03641_MAGBIO Magnolia biondii
MD12G1181400 Malus domestica
Medtr4g013240 Medicago truncatula
Medtr4g013245 Medicago truncatula
MELO3C026034.2 Cucumis melo
Migut.J00086 Erythranthe guttata
MSTRG.18966 Avicennia marina
MSTRG.18968 Avicennia marina
Nitab4.5_0000355g0170 Nicotiana tabacum
Nitab4.5_0012987g0010 Nicotiana tabacum
Nn2g13286 Nelumbo nucifera
Nn5g27904 Nelumbo nucifera
Oeu026968.1 Olea europaea
Os06g0560000 Oryza sativa ssp. japonica
Peaxi162Scf00264g00861 Petunia axillaris
PGR031G1936 Punica granatum
PGSC0003DMG400011865 Solanum tuberosum
Phvul.010G062200 Phaseolus vulgaris
Phvul.010G062300 Phaseolus vulgaris
Potri.016G128500 Populus trichocarpa
Potri.016G128600 Populus trichocarpa
Pp3c20_5190 Physcomitrium patens
Prupe.6G286200 Prunus persica
Psat7g249920 Pisum sativum
PSO017G1341 Papaver somniferum
PSO266G0027 Papaver somniferum
PSO349G0244 Papaver somniferum
PSO349G0271 Papaver somniferum
QL07p033645 Quercus lobata
RcHm_v2.0_Chr3g0461431 Rosa chinensis
RcHm_v2.0_Chr3g0461441 Rosa chinensis
RcHm_v2.0_Chr3g0461451 Rosa chinensis
RcHm_v2.0_Chr6g0247161 Rosa chinensis
Rhsim05G0226800 Rhododendron simsii
Sabra16G0129900 Salix brachista
SalBow5G5570 Salvia bowleyana
Sc02g0000650 Simmondsia chinensis
Sed0018512 Sechium edule
Sed0023395 Sechium edule
SEGI_11914 Sequoiadendron giganteum
SEGI_29225 Sequoiadendron giganteum
SGA_v2.0_scaffold85G26671 Striga asiatica
SMO115G0243 Selaginella moellendorffii
SMO118G0042 Selaginella moellendorffii
Solyc10g076280.3 Solanum lycopersicum
Sopen10g027900 Solanum pennellii
Sp4g20780 Schrenkiella parvula
Sp6g39180 Schrenkiella parvula
TAR633G0963 Trochodendron aralioides
THA.LOC104806636 Tarenaya hassleriana
Thecc.05G005200 Theobroma cacao
Thecc.05G005300 Theobroma cacao
Thhalv10013299m.g Eutrema salsugineum
Thhalv10016525m.g Eutrema salsugineum
TPR.G5208 Trifolium pratense
TPR.G5249 Trifolium pratense
TWI53G0484 Tripterygium wilfordii
TWI74G0689 Tripterygium wilfordii
unitig_8.g4466 Utricularia gibba
vmacro20334 Vaccinium macrocarpon
VMungo0331G0711 Vigna mungo
VMungo0331G0982 Vigna mungo
Zm00001eb384340 Zea mays
Zm00001eb384360 Zea mays

User provided reference genes

Program Settings