Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p25480 Brassica napus
Aa31LG1G27530 Aethionema arabicum
Aa31LG5G23500 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis
Actinidia20165 Actinidia chinensis
Ah.02g117780 Amaranthus hybridus
AL1G26590 Arabidopsis lyrata
Aqoxy5G03866 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea
AT1G14620 Arabidopsis thaliana
ATR0751G024 Amborella trichopoda
Atru.chr1.2758 Acer truncatum
Atru.chr7.1501 Acer truncatum
AUR62003587 Chenopodium quinoa
AUR62017900 Chenopodium quinoa
BcaB01g03237 Brassica carinata
BcaC01g05093 Brassica carinata
BcaC02g07022 Brassica carinata
BcaC02g12495 Brassica carinata
BolC3t15389H Brassica oleracea
BraA03t11766Z Brassica rapa
BraA05t19164Z Brassica rapa
C03p30410 Brassica napus
C04p01920 Brassica napus
CAN.G467.8 Capsicum annuum
CAN.G472.27 Capsicum annuum
CANSAT56G1246 Cannabis sativa
CARHR015120 Cardamine hirsuta
CARHR141400 Cardamine hirsuta
Carub.0001s1438 Capsella rubella
Ca_03495_v3 Cicer arietinum L.
Ca_09511_v3 Cicer arietinum L.
Ca_30061_v3 Cicer arietinum L.
CBR_g37539 Chara braunii
Cc02_g38590 Coffea canephora
CDE10G0889 Ceratophyllum demersum
Cfa003870 Carpinus fangiana
Cfa024785 Carpinus fangiana
Ciclev10021940m.g Citrus clementina
CiPaw.01G067700 Carya illinoinensis
CiPaw.02G035500 Carya illinoinensis
ClCG09G006700 Citrullus lanatus
COL.COLO4_07824 Corchorus olitorius
COL.COLO4_19238 Corchorus olitorius
Cpa.g.sc11.71 Carica papaya
Cre03.g193550 Chlamydomonas reinhardtii
CsaV3_7G028460 Cucumis sativus L.
CSS0029792 Camellia sinensis var. sinensis
CSS0049269 Camellia sinensis var. sinensis
DCAR_009468 Daucus carota
DCAR_025215 Daucus carota
Dinv32523 Davidia involucrata
Dinv43865 Davidia involucrata
Duzib138G1303 Durio zibethinus
ECA236G3941 Erigeron canadensis
EL10Ac1g01391 Beta vulgaris
EL10Ac6g15290 Beta vulgaris
Eucgr.C02275 Eucalyptus grandis
FAN01G2056 Fragaria x ananassa
FAN01G2862 Fragaria x ananassa
FAN03G0419 Fragaria x ananassa
FAN03G2999 Fragaria x ananassa
FAN03G3471 Fragaria x ananassa
FAN06G0959 Fragaria x ananassa
FAN06G3506 Fragaria x ananassa
FAN06G3959 Fragaria x ananassa
FAN10G1826 Fragaria x ananassa
FvH4_7g21940 Fragaria vesca
Glyma.09G007400 Glycine max
Glyma.15G111800 Glycine max
Glyma.16G031500 Glycine max
Glyma.U031114 Glycine max
Gohir.A04G053400 Gossypium hirsutum
Gohir.A08G128100 Gossypium hirsutum
Gohir.D04G091100 Gossypium hirsutum
Gohir.D08G149400 Gossypium hirsutum
Gorai.004G155200 Gossypium raimondii
Gorai.009G392100 Gossypium raimondii
GSVIVG01026970001 Vitis vinifera
HanXRQChr06g0170371 Helianthus annuus
Haze_15567 Corylus avellana
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla
HPP92_022817 Vanilla planifolia
Hund26583 Selenicereus undatus
Lalb_Chr10g0096631 Lupinus albus
Lalb_Chr17g0338991 Lupinus albus
Lj3g0016777 Lotus japonicus
Lj9A589G62 Lonicera japonica
Lj9A590G54 Lonicera japonica
Lsat_1_v5_gn_7_2701 Lactuca sativa
Manes.05G029000 Manihot esculenta
Mapoly0025s0100 Marchantia polymorpha
MBI16_g00685_MAGBIO Magnolia biondii
MBI16_g10331_MAGBIO Magnolia biondii
MBI16_g18199_MAGBIO Magnolia biondii
MCO04G325 Micromonas commoda
MD05G1056600 Malus domestica
MD07G1193700 Malus domestica
MD07G1194000 Malus domestica
MD10G1064600 Malus domestica
Medtr7g117435 Medicago truncatula
Medtr8g028485 Medicago truncatula
Medtr8g087440 Medicago truncatula
MELO3C015876.2 Cucumis melo
Migut.B01801 Erythranthe guttata
MSTRG.17300 Avicennia marina
Nitab4.5_0000116g0380 Nicotiana tabacum
Nitab4.5_0001141g0050 Nicotiana tabacum
Nitab4.5_0007641g0010 Nicotiana tabacum
Nn1g07606 Nelumbo nucifera
Nn1g07699 Nelumbo nucifera
Oeu004904.1 Olea europaea
Oeu010628.1 Olea europaea
Os06g0300600 Oryza sativa ssp. japonica
Peaxi162Scf00037g01020 Petunia axillaris
PGR142G0776 Punica granatum
PGSC0003DMG400031793 Solanum tuberosum
PGSC0003DMG400032548 Solanum tuberosum
PGSC0003DMG401011505 Solanum tuberosum
PGSC0003DMG402011505 Solanum tuberosum
Phvul.006G145900 Phaseolus vulgaris
Potri.002G164800 Populus trichocarpa
Pp3c13_9680 Physcomitrium patens
Prupe.2G231400 Prunus persica
Psat4g157720 Pisum sativum
Psat5g297040 Pisum sativum
PSO017G5376 Papaver somniferum
PSO063G4449 Papaver somniferum
RcHm_v2.0_Chr1g0366151 Rosa chinensis
RcHm_v2.0_Chr1g0366261 Rosa chinensis
RcHm_v2.0_Chr3g0490801 Rosa chinensis
RcHm_v2.0_Chr3g0492131 Rosa chinensis
Rhsim07G0009900 Rhododendron simsii
Rhsim07G0218600 Rhododendron simsii
Rhsim07G0219100 Rhododendron simsii
Rhsim09G0104800 Rhododendron simsii
Sabra02G0146700 Salix brachista
SalBow3G3674 Salvia bowleyana
Sc16g0003870 Simmondsia chinensis
Sed0018043 Sechium edule
SEGI_36995 Sequoiadendron giganteum
SGA_v2.0_scaffold4G02277 Striga asiatica
SHI13371 Sapria himalayana
SMO271G0103 Selaginella moellendorffii
SMO308G0077 Selaginella moellendorffii
Solyc04g009140.4 Solanum lycopersicum
Solyc09g075370.3 Solanum lycopersicum
Sopen04g004260 Solanum pennellii
Sopen09g030140 Solanum pennellii
Sp1g12980 Schrenkiella parvula
Sp4g28190 Schrenkiella parvula
TAR374G1598 Trochodendron aralioides
THA.LOC104827605 Tarenaya hassleriana
Thecc.01G352200 Theobroma cacao
Thhalv10008660m.g Eutrema salsugineum
TPR.G28293 Trifolium pratense
TPR.G7188 Trifolium pratense
TWI09G0095 Tripterygium wilfordii
unitig_0.g337 Utricularia gibba
vmacro09727 Vaccinium macrocarpon
vmacro13225 Vaccinium macrocarpon
vmacro17287 Vaccinium macrocarpon
VMungo0331G0027 Vigna mungo
VMungo0540G0091 Vigna mungo
Zm00001eb381110 Zea mays

User provided reference genes

Program Settings