Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p33790 Brassica napus
Aa31LG8G7760 Aethionema arabicum
Aa31LG8G7780 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis
Actinidia18370 Actinidia chinensis
AL249U10010 Arabidopsis lyrata
AL3G35010 Arabidopsis lyrata
Aqoxy1G00569 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea
AT3G21060 Arabidopsis thaliana
ATR0661G188 Amborella trichopoda
Atru.chr10.436 Acer truncatum
Atru.chr12.1162 Acer truncatum
Atru.chr12.1163 Acer truncatum
AUR62001320 Chenopodium quinoa
AUR62025703 Chenopodium quinoa
BcaB04g20615 Brassica carinata
BcaC01g03529 Brassica carinata
BcaC09g49045 Brassica carinata
BolC1t04267H Brassica oleracea
BraA01t03490Z Brassica rapa
C01p43210 Brassica napus
CANSAT56G1750 Cannabis sativa
CARHR096890 Cardamine hirsuta
Carub.0003s2096 Capsella rubella
Ca_05576_v3 Cicer arietinum L.
Ca_13103_v3 Cicer arietinum L.
Ca_24139_v3 Cicer arietinum L.
Ca_24147_v3 Cicer arietinum L.
CBR_g10843 Chara braunii
CBR_g18561 Chara braunii
Cc08_g06030 Coffea canephora
CDE04G1921 Ceratophyllum demersum
CDE07G1685 Ceratophyllum demersum
Cfa023087 Carpinus fangiana
Ciclev10014800m.g Citrus clementina
CiPaw.14G037100 Carya illinoinensis
ClCG05G022120 Citrullus lanatus
COL.COLO4_16323 Corchorus olitorius
Cpa.g.sc138.49 Carica papaya
Cre03.g195750 Chlamydomonas reinhardtii
CsaV3_5G035020 Cucumis sativus L.
CSS0018495 Camellia sinensis var. sinensis
CSS0025743 Camellia sinensis var. sinensis
DCAR_002139 Daucus carota
Dinv04121 Davidia involucrata
Dinv18710 Davidia involucrata
Dinv18720 Davidia involucrata
Dinv18721 Davidia involucrata
Dinv30359 Davidia involucrata
Duzib106G1791 Durio zibethinus
Duzib114G0085 Durio zibethinus
ECA238G3001 Erigeron canadensis
ECA248G0690 Erigeron canadensis
EL10Ac7g18124 Beta vulgaris
Eucgr.G02654 Eucalyptus grandis
FAN15G0031 Fragaria x ananassa
FAN20G0431 Fragaria x ananassa
FAN24G2713 Fragaria x ananassa
FAN27G0821 Fragaria x ananassa
FvH4_2g10510 Fragaria vesca
Glyma.04G129500 Glycine max
Glyma.05G087400 Glycine max
Glyma.06G315900 Glycine max
Glyma.08G229800 Glycine max
Glyma.12G171232 Glycine max
Glyma.13G124200 Glycine max
Gohir.A13G003500 Gossypium hirsutum
Gohir.D13G003400 Gossypium hirsutum
Gorai.013G003300 Gossypium raimondii
GSVIVG01018295001 Vitis vinifera
HanXRQChr09g0259631 Helianthus annuus
HanXRQChr14g0446551 Helianthus annuus
Haze_03415 Corylus avellana
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla
HPP92_001742 Vanilla planifolia
Hund00055 Selenicereus undatus
Hund06390 Selenicereus undatus
Lalb_Chr01g0007661 Lupinus albus
Lalb_Chr03g0032271 Lupinus albus
Lalb_Chr03g0032281 Lupinus albus
Lalb_Chr18g0049111 Lupinus albus
Lj3g0025560 Lotus japonicus
Lj8A287G21 Lonicera japonica
Lsat_1_v5_gn_4_138820 Lactuca sativa
Manes.13G077346 Manihot esculenta
Manes.13G077544 Manihot esculenta
Manes.13G078700 Manihot esculenta
Mapoly0028s0049 Marchantia polymorpha
MBI16_g14436_MAGBIO Magnolia biondii
MCO03G571 Micromonas commoda
MD02G1259400 Malus domestica
MD07G1061200 Malus domestica
Medtr3g040320 Medicago truncatula
Medtr3g071750 Medicago truncatula
Medtr5g069620 Medicago truncatula
Medtr8g041740 Medicago truncatula
Medtr8g045440 Medicago truncatula
Medtr8g045463 Medicago truncatula
Medtr8g045470 Medicago truncatula
MELO3C012312.2 Cucumis melo
Migut.B01123 Erythranthe guttata
MSTRG.20468 Avicennia marina
Nitab4.5_0001611g0030 Nicotiana tabacum
Nitab4.5_0004014g0070 Nicotiana tabacum
Nn1g04650 Nelumbo nucifera
Nn5g30473 Nelumbo nucifera
Oeu012473.1 Olea europaea
Oeu027040.1 Olea europaea
Os03g0207900 Oryza sativa ssp. japonica
Peaxi162Scf00647g00139 Petunia axillaris
PGR142G1915 Punica granatum
PGSC0003DMG400027522 Solanum tuberosum
Phvul.003G276000 Phaseolus vulgaris
Phvul.008G161500 Phaseolus vulgaris
Phvul.011G184500 Phaseolus vulgaris
Potri.001G305500 Populus trichocarpa
Potri.019G000900 Populus trichocarpa
Pp3c12_14420 Physcomitrium patens
Pp3c4_7580 Physcomitrium patens
PRCOL_00000885 Prasinoderma coloniale
Prupe.5G058900 Prunus persica
Psat2g059840 Pisum sativum
Psat4g180480 Pisum sativum
Psat4g200760 Pisum sativum
PSO478G0462 Papaver somniferum
PSO541G0139 Papaver somniferum
QL04p049870 Quercus lobata
RcHm_v2.0_Chr6g0268021 Rosa chinensis
Rhsim01G0121500 Rhododendron simsii
Rhsim04G0193600 Rhododendron simsii
Sabra16G0191800 Salix brachista
Sabra19G0005800 Salix brachista
Sabra19G0006000 Salix brachista
Sabra19G0013500 Salix brachista
Sabra19G0014200 Salix brachista
SalBow4G0418 Salvia bowleyana
Sc18g0006930 Simmondsia chinensis
Sed0005167 Sechium edule
Sed0024731 Sechium edule
SEGI_15684 Sequoiadendron giganteum
SEGI_20000 Sequoiadendron giganteum
SGA_v2.0_scaffold196G40978 Striga asiatica
SHI06412 Sapria himalayana
SMO145G0186 Selaginella moellendorffii
Solyc01g096950.4 Solanum lycopersicum
Sopen01g040660 Solanum pennellii
Sp3g19020 Schrenkiella parvula
TAR376G0596 Trochodendron aralioides
TAR381G0930 Trochodendron aralioides
TAR625G1450 Trochodendron aralioides
THA.LOC104804661 Tarenaya hassleriana
Thecc.10G122400 Theobroma cacao
Thhalv10020461m.g Eutrema salsugineum
TPR.G14605 Trifolium pratense
TPR.G24022 Trifolium pratense
TWI75G1118 Tripterygium wilfordii
unitig_26.g9496 Utricularia gibba
unitig_26.g9497 Utricularia gibba
vmacro20845 Vaccinium macrocarpon
VMungo0251G3202 Vigna mungo
VMungo0647G0038 Vigna mungo
VMungo1127G1364 Vigna mungo
Zm00001eb007220 Zea mays

User provided reference genes

Program Settings